Variant report

Variant	rs1124090
Chromosome Location	chr8:122224270-122224271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122221834..122224554-chr8:122225453..122227922,2	MCF-7	breast:

Extended variants
information (count: 73 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10089470	0.88[EUR][1000 genomes]
rs10090549	0.87[EUR][1000 genomes]
rs10090684	0.87[EUR][1000 genomes]
rs10100820	0.87[EUR][1000 genomes]
rs10100931	0.87[EUR][1000 genomes]
rs10101120	0.87[EUR][1000 genomes]
rs10102893	0.84[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103819	0.87[EUR][1000 genomes]
rs10104288	0.89[EUR][1000 genomes]
rs10104487	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10104658	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10104851	0.88[EUR][1000 genomes]
rs10107769	0.88[EUR][1000 genomes]
rs10112656	0.87[EUR][1000 genomes]
rs1021897	0.91[EUR][1000 genomes]
rs1021898	0.91[EUR][1000 genomes]
rs1021899	0.91[EUR][1000 genomes]
rs1021900	0.91[EUR][1000 genomes]
rs10505396	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996526	0.91[EUR][1000 genomes]
rs13258658	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261111	0.87[EUR][1000 genomes]
rs1504650	0.90[EUR][1000 genomes]
rs1504651	0.90[EUR][1000 genomes]
rs1504652	0.90[EUR][1000 genomes]
rs1504653	0.90[EUR][1000 genomes]
rs1504654	0.90[EUR][1000 genomes]
rs1504655	0.90[EUR][1000 genomes]
rs1504656	0.88[EUR][1000 genomes]
rs1553507	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553508	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17205796	0.91[EUR][1000 genomes]
rs17205915	0.91[EUR][1000 genomes]
rs17206976	1.00[ASN][1000 genomes]
rs17265202	0.90[EUR][1000 genomes]
rs17265314	0.91[EUR][1000 genomes]
rs1827655	1.00[ASN][1000 genomes]
rs1847545	0.88[EUR][1000 genomes]
rs2134931	0.90[EUR][1000 genomes]
rs2174348	0.91[EUR][1000 genomes]
rs2174349	0.91[EUR][1000 genomes]
rs2202381	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2386064	0.88[EUR][1000 genomes]
rs2386065	0.88[EUR][1000 genomes]
rs2386267	1.00[ASN][1000 genomes]
rs2581548	1.00[ASN][1000 genomes]
rs2581549	1.00[ASN][1000 genomes]
rs2581550	1.00[ASN][1000 genomes]
rs2581552	1.00[ASN][1000 genomes]
rs2656110	1.00[ASN][1000 genomes]
rs2656111	1.00[ASN][1000 genomes]
rs2656113	1.00[ASN][1000 genomes]
rs2656114	1.00[ASN][1000 genomes]
rs2656115	1.00[ASN][1000 genomes]
rs2656116	1.00[ASN][1000 genomes]
rs34698310	0.90[EUR][1000 genomes]
rs35806375	0.92[EUR][1000 genomes]
rs4242325	1.00[CHB][hapmap]
rs4870764	0.88[EUR][1000 genomes]
rs62526726	1.00[ASN][1000 genomes]
rs6982766	1.00[ASN][1000 genomes]
rs6983966	1.00[ASN][1000 genomes]
rs6988416	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988639	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989776	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7821650	0.90[EUR][1000 genomes]
rs7838368	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs905759	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1021839	chr8:122173682-122240824	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122218600-122224400	Weak transcription	HSMMtube	muscle
2	chr8:122222600-122224400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr8:122223600-122224600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:122224000-122224800	Enhancers	NHDF-Ad	bronchial
5	chr8:122224000-122225000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:122224200-122224600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr8:122224200-122224600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:122224200-122225000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:122224200-122225000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr8:122224200-122225000	Enhancers	Fetal Lung	lung
11	chr8:122224200-122225000	Enhancers	HSMM	muscle
12	chr8:122224200-122225000	Enhancers	Osteobl	bone

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