Variant report

Variant	rs7838368
Chromosome Location	chr8:122212869-122212870
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10089470	0.80[EUR][1000 genomes]
rs10102893	0.84[EUR][1000 genomes]
rs10104288	0.81[EUR][1000 genomes]
rs10104851	0.80[EUR][1000 genomes]
rs10107769	0.80[EUR][1000 genomes]
rs10108717	0.81[EUR][1000 genomes]
rs1021897	0.83[EUR][1000 genomes]
rs1021898	0.83[EUR][1000 genomes]
rs1021899	0.83[EUR][1000 genomes]
rs1021900	0.83[EUR][1000 genomes]
rs1124090	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11996526	0.83[EUR][1000 genomes]
rs1504650	0.82[EUR][1000 genomes]
rs1504651	0.82[EUR][1000 genomes]
rs1504652	0.82[EUR][1000 genomes]
rs1504653	0.82[EUR][1000 genomes]
rs1504654	0.82[EUR][1000 genomes]
rs1504655	0.82[EUR][1000 genomes]
rs1504656	0.80[EUR][1000 genomes]
rs17205796	0.83[EUR][1000 genomes]
rs17205915	0.83[EUR][1000 genomes]
rs17262197	0.80[EUR][1000 genomes]
rs17265202	0.82[EUR][1000 genomes]
rs17265314	0.83[EUR][1000 genomes]
rs1847545	0.80[EUR][1000 genomes]
rs2134931	0.82[EUR][1000 genomes]
rs2174348	0.83[EUR][1000 genomes]
rs2174349	0.83[EUR][1000 genomes]
rs2202381	0.81[EUR][1000 genomes]
rs2386064	0.80[EUR][1000 genomes]
rs2386065	0.80[EUR][1000 genomes]
rs34698310	0.82[EUR][1000 genomes]
rs35806375	0.84[EUR][1000 genomes]
rs4304334	0.80[EUR][1000 genomes]
rs4870764	0.80[EUR][1000 genomes]
rs7821650	0.82[EUR][1000 genomes]
rs905759	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1021839	chr8:122173682-122240824	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3420511	chr8:122211271-122216069	Active TSS ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv3442529	chr8:122212856-122213336	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122203800-122213400	Weak transcription	Fetal Lung	lung
2	chr8:122208800-122213400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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