Variant report

Variant	rs10104487
Chromosome Location	chr8:122250624-122250625
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:122232119..122234816-chr8:122249979..122252637,2	MCF-7	breast:
2	chr8:122248020..122250824-chr8:122267512..122270459,2	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10089470	0.86[EUR][1000 genomes]
rs10090549	0.85[EUR][1000 genomes]
rs10090684	0.85[EUR][1000 genomes]
rs10100820	0.86[EUR][1000 genomes]
rs10100931	0.86[EUR][1000 genomes]
rs10101120	0.86[EUR][1000 genomes]
rs10102893	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10103819	0.85[EUR][1000 genomes]
rs10104288	0.86[EUR][1000 genomes]
rs10104658	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10104851	0.86[EUR][1000 genomes]
rs10107769	0.86[EUR][1000 genomes]
rs10112656	0.85[EUR][1000 genomes]
rs1021897	0.83[EUR][1000 genomes]
rs1021898	0.83[EUR][1000 genomes]
rs1021899	0.83[EUR][1000 genomes]
rs1021900	0.83[EUR][1000 genomes]
rs10505396	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1124090	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11996526	0.83[EUR][1000 genomes]
rs13258658	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13261111	0.86[EUR][1000 genomes]
rs1504650	0.83[EUR][1000 genomes]
rs1504651	0.83[EUR][1000 genomes]
rs1504652	0.83[EUR][1000 genomes]
rs1504653	0.83[EUR][1000 genomes]
rs1504654	0.84[EUR][1000 genomes]
rs1504655	0.84[EUR][1000 genomes]
rs1504656	0.86[EUR][1000 genomes]
rs1553507	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1553508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17205796	0.83[EUR][1000 genomes]
rs17205915	0.83[EUR][1000 genomes]
rs17206976	1.00[ASN][1000 genomes]
rs17265202	0.82[EUR][1000 genomes]
rs17265314	0.83[EUR][1000 genomes]
rs1827655	1.00[ASN][1000 genomes]
rs1847545	0.86[EUR][1000 genomes]
rs2134931	0.84[EUR][1000 genomes]
rs2174348	0.83[EUR][1000 genomes]
rs2174349	0.83[EUR][1000 genomes]
rs2202381	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2386064	0.86[EUR][1000 genomes]
rs2386065	0.86[EUR][1000 genomes]
rs2386267	1.00[ASN][1000 genomes]
rs2581548	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2581549	1.00[ASN][1000 genomes]
rs2581550	1.00[ASN][1000 genomes]
rs2581552	1.00[ASN][1000 genomes]
rs2656110	1.00[ASN][1000 genomes]
rs2656111	1.00[ASN][1000 genomes]
rs2656113	1.00[ASN][1000 genomes]
rs2656114	1.00[ASN][1000 genomes]
rs2656115	1.00[ASN][1000 genomes]
rs2656116	1.00[ASN][1000 genomes]
rs34698310	0.82[EUR][1000 genomes]
rs35806375	0.81[EUR][1000 genomes]
rs4242325	1.00[CHB][hapmap]
rs4870764	0.86[EUR][1000 genomes]
rs62526726	1.00[ASN][1000 genomes]
rs6982766	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983966	1.00[ASN][1000 genomes]
rs6988416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6989776	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815430	0.97[EUR][1000 genomes]
rs7821650	0.82[EUR][1000 genomes]
rs905759	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891424	chr8:121873345-122393258	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1844734	chr8:121928250-122283585	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	esv3330574	chr8:122039099-122386130	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv891426	chr8:122078334-122393258	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:122246800-122250800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr8:122247400-122252400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr8:122250000-122253800	Enhancers	NHDF-Ad	bronchial
4	chr8:122250400-122251000	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr8:122250400-122253800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr8:122250600-122251200	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr8:122250600-122251200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr8:122250600-122251400	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr8:122250600-122252200	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links