Variant report

Variant	rs26585
Chromosome Location	chr5:115768214-115768215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115763956..115765472-chr5:115766076..115768967,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs153596	0.81[ASN][1000 genomes]
rs153746	0.81[ASN][1000 genomes]
rs26299	0.85[EUR][1000 genomes]
rs26587	0.84[EUR][1000 genomes]
rs26588	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs26589	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs26591	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs26594	0.84[CEU][hapmap];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs26595	0.84[ASN][1000 genomes]
rs26596	0.84[ASN][1000 genomes]
rs26598	0.84[ASN][1000 genomes]
rs26599	0.81[ASN][1000 genomes]
rs26600	0.81[ASN][1000 genomes]
rs33066	0.84[EUR][1000 genomes]
rs40000	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs40102	1.00[YRI][hapmap]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:115730400-115769600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr5:115748600-115783000	Weak transcription	Thymus	Thymus
5	chr5:115749400-115782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr5:115750200-115779400	Weak transcription	Fetal Intestine Small	intestine
7	chr5:115751600-115774800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr5:115752800-115779400	Weak transcription	Fetal Intestine Large	intestine
9	chr5:115756600-115768800	Weak transcription	Primary T cells from cord blood	blood
10	chr5:115757000-115774000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:115757200-115782000	Weak transcription	Gastric	stomach
12	chr5:115757400-115775400	Weak transcription	Adipose Nuclei	Adipose
13	chr5:115758000-115769200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr5:115758800-115768400	Weak transcription	Primary B cells from cord blood	blood
15	chr5:115759000-115773600	Weak transcription	Fetal Kidney	kidney
16	chr5:115759800-115776400	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr5:115760000-115781400	Weak transcription	Primary B cells from peripheral blood	blood
18	chr5:115761600-115773400	Weak transcription	Liver	Liver
19	chr5:115761600-115773400	Weak transcription	HepG2	liver
20	chr5:115762600-115771800	Weak transcription	Left Ventricle	heart
21	chr5:115764400-115768400	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr5:115765800-115771800	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr5:115766000-115772400	Weak transcription	Brain Substantia Nigra	brain
24	chr5:115766600-115768800	Enhancers	Brain Angular Gyrus	brain
25	chr5:115767200-115768400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:115767200-115768400	Enhancers	Ovary	ovary
27	chr5:115767400-115768400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr5:115767400-115768400	Enhancers	Fetal Lung	lung
29	chr5:115768000-115768400	Weak transcription	Brain Anterior Caudate	brain
30	chr5:115768000-115774600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr5:115768200-115768400	Enhancers	Brain Hippocampus Middle	brain
32	chr5:115768200-115768400	Enhancers	Fetal Brain Male	brain

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