Variant report

Variant	rs26591
Chromosome Location	chr5:115775311-115775312
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115774637..115776948-chr5:115779132..115781411,2	K562	blood:

Variant related genes	Relation type
ENSG00000256121	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10058506	0.87[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs153742	0.83[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs153743	0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs154555	0.83[CHB][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs171797	0.83[CEU][hapmap]
rs191732	0.85[CHD][hapmap];0.85[JPT][hapmap]
rs1963858	0.87[CEU][hapmap]
rs2278262	0.85[JPT][hapmap]
rs258017	0.86[EUR][1000 genomes]
rs258018	0.83[CEU][hapmap]
rs26299	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs26585	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs26587	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs26588	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs26589	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs26594	0.80[ASW][hapmap];0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.87[LWK][hapmap];0.92[MEX][hapmap];0.82[MKK][hapmap];0.87[TSI][hapmap];0.92[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs27644	0.83[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.81[ASN][1000 genomes]
rs28028	0.81[CHD][hapmap];0.85[JPT][hapmap]
rs28029	0.83[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.81[ASN][1000 genomes]
rs28308	0.81[CHD][hapmap]
rs33066	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34967	0.81[CHD][hapmap];0.85[JPT][hapmap]
rs40000	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs40102	0.82[CHD][hapmap];0.85[JPT][hapmap]
rs40103	0.90[EUR][1000 genomes]
rs469035	0.85[JPT][hapmap]

No data

Chromatin state (count:54 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:115748600-115783000	Weak transcription	Thymus	Thymus
4	chr5:115749400-115782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr5:115750200-115779400	Weak transcription	Fetal Intestine Small	intestine
6	chr5:115752800-115779400	Weak transcription	Fetal Intestine Large	intestine
7	chr5:115757200-115782000	Weak transcription	Gastric	stomach
8	chr5:115757400-115775400	Weak transcription	Adipose Nuclei	Adipose
9	chr5:115759800-115776400	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr5:115760000-115781400	Weak transcription	Primary B cells from peripheral blood	blood
11	chr5:115768400-115777000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr5:115768400-115777800	Weak transcription	Ovary	ovary
13	chr5:115768400-115781800	Weak transcription	Fetal Lung	lung
14	chr5:115768800-115780600	Weak transcription	Primary B cells from cord blood	blood
15	chr5:115769800-115777800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr5:115772000-115781200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr5:115772000-115781800	Weak transcription	Spleen	Spleen
18	chr5:115772200-115779000	Enhancers	Brain Angular Gyrus	brain
19	chr5:115772200-115781400	Enhancers	Brain Hippocampus Middle	brain
20	chr5:115772400-115777000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr5:115772400-115781400	Enhancers	Brain Substantia Nigra	brain
22	chr5:115772600-115781200	Enhancers	Brain Cingulate Gyrus	brain
23	chr5:115772800-115776000	Weak transcription	Skeletal Muscle Male	skeletal muscle
24	chr5:115773200-115780600	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr5:115773200-115781000	Weak transcription	Primary T cells from cord blood	blood
26	chr5:115773200-115781200	Enhancers	Brain Anterior Caudate	brain
27	chr5:115773400-115776200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr5:115773400-115777400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr5:115773600-115781600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
30	chr5:115773800-115775400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
31	chr5:115773800-115776800	Weak transcription	HepG2	liver
32	chr5:115773800-115777200	Weak transcription	Liver	Liver
33	chr5:115773800-115779600	Weak transcription	Fetal Kidney	kidney
34	chr5:115774000-115777400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr5:115774000-115779000	Enhancers	Fetal Muscle Leg	muscle
36	chr5:115774000-115780400	Weak transcription	Rectal Mucosa Donor 31	rectum
37	chr5:115774400-115777800	Weak transcription	Right Ventricle	heart
38	chr5:115774400-115778200	Enhancers	Psoas Muscle	Psoas
39	chr5:115774400-115778400	Enhancers	Skeletal Muscle Female	skeletal muscle
40	chr5:115774400-115779000	Enhancers	Fetal Heart	heart
41	chr5:115774400-115779400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr5:115774600-115778400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr5:115774600-115780200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr5:115774600-115780200	Weak transcription	Duodenum Mucosa	Duodenum
45	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
46	chr5:115774800-115775600	Enhancers	Stomach Smooth Muscle	stomach
47	chr5:115774800-115775800	Weak transcription	Left Ventricle	heart
48	chr5:115775000-115775800	Weak transcription	Fetal Muscle Trunk	muscle
49	chr5:115775000-115776200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr5:115775000-115776600	Weak transcription	Fetal Stomach	stomach

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