Variant report

Variant	rs27644
Chromosome Location	chr5:115801702-115801703
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115794809..115796777-chr5:115799899..115802150,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10058506	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs153742	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.87[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs153743	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs154555	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs171797	0.89[CHB][hapmap];0.88[ASN][1000 genomes]
rs191732	0.89[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs2278262	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs258017	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs258018	0.89[CHB][hapmap];0.87[ASN][1000 genomes]
rs258020	0.88[ASN][1000 genomes]
rs26591	0.83[CHB][hapmap];0.85[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.81[ASN][1000 genomes]
rs26592	0.82[CEU][hapmap]
rs26594	0.83[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.81[ASN][1000 genomes]
rs26603	0.83[ASN][1000 genomes]
rs27495	0.88[CHB][hapmap];0.85[ASN][1000 genomes]
rs28028	0.89[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs28029	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];1.00[TSI][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28308	0.89[CHB][hapmap];0.91[CHD][hapmap];0.86[ASN][1000 genomes]
rs34967	0.89[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs40102	0.89[CHB][hapmap];0.91[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs40103	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs469035	0.89[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.86[ASN][1000 genomes]
rs59197344	0.87[EUR][1000 genomes]
rs7704579	0.88[CEU][hapmap];0.88[EUR][1000 genomes]

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
2	chr5:115783600-115802200	Weak transcription	Colonic Mucosa	Colon
3	chr5:115783600-115802200	Weak transcription	Pancreas	Pancrea
4	chr5:115783600-115803400	Weak transcription	Esophagus	oesophagus
5	chr5:115783600-115813000	Weak transcription	Spleen	Spleen
6	chr5:115783600-115813200	Weak transcription	Gastric	stomach
7	chr5:115783600-115829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr5:115783800-115803200	Weak transcription	Liver	Liver
9	chr5:115788000-115813200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr5:115789600-115812600	Strong transcription	Fetal Intestine Large	intestine
11	chr5:115789800-115803200	Weak transcription	Lung	lung
12	chr5:115790400-115803200	Weak transcription	Aorta	Aorta
13	chr5:115790400-115812400	Weak transcription	HepG2	liver
14	chr5:115790800-115802800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr5:115791000-115802200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr5:115791000-115802200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr5:115791000-115802800	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr5:115791000-115804000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr5:115791000-115812400	Weak transcription	Fetal Brain Male	brain
20	chr5:115791000-115812600	Weak transcription	Ovary	ovary
21	chr5:115791400-115802200	Weak transcription	Primary T cells from cord blood	blood
22	chr5:115791400-115805400	Weak transcription	HSMMtube	muscle
23	chr5:115791600-115809600	Weak transcription	Right Atrium	heart
24	chr5:115791600-115838000	Weak transcription	Right Ventricle	heart
25	chr5:115792000-115805200	Weak transcription	Primary hematopoietic stem cells	blood
26	chr5:115792000-115809200	Weak transcription	Colon Smooth Muscle	Colon
27	chr5:115792800-115802600	Weak transcription	Fetal Kidney	kidney
28	chr5:115792800-115812600	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr5:115796000-115833400	Strong transcription	HUES64 Cell Line	embryonic stem cell
30	chr5:115796600-115804400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr5:115797000-115834800	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr5:115797000-115838400	Strong transcription	Placenta	Placenta
33	chr5:115797400-115802200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr5:115797400-115833800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
35	chr5:115797600-115802400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr5:115797600-115803400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr5:115797600-115834600	Strong transcription	H9 Cell Line	embryonic stem cell
38	chr5:115797800-115802800	Strong transcription	Fetal Muscle Leg	muscle
39	chr5:115797800-115834800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
40	chr5:115798000-115833200	Strong transcription	HUES48 Cell Line	embryonic stem cell
41	chr5:115798000-115834600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
42	chr5:115798600-115802200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr5:115798600-115803000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr5:115798600-115803200	Enhancers	Brain Angular Gyrus	brain
45	chr5:115799000-115830400	Strong transcription	HUES6 Cell Line	embryonic stem cell
46	chr5:115799200-115803600	Enhancers	Brain Substantia Nigra	brain
47	chr5:115799400-115804000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr5:115799400-115812200	Strong transcription	Rectal Mucosa Donor 29	rectum
49	chr5:115799400-115832000	Strong transcription	Fetal Muscle Trunk	muscle
50	chr5:115800200-115804000	Strong transcription	Fetal Intestine Small	intestine

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