Variant report

Variant	rs26592
Chromosome Location	chr5:115775542-115775543
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115774637..115776948-chr5:115779132..115781411,2	K562	blood:

Variant related genes	Relation type
ENSG00000256121	Chromatin interaction

rs_ID	r²[population]
rs153742	0.82[CEU][hapmap]
rs153743	0.80[CEU][hapmap]
rs154555	0.81[CEU][hapmap]
rs27644	0.82[CEU][hapmap]
rs28029	0.82[CEU][hapmap]
rs33064	0.93[EUR][1000 genomes]
rs33067	0.82[EUR][1000 genomes]
rs33069	0.93[EUR][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs26592	FEM1C	cis	cerebellum	SCAN

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115723000-115776000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr5:115723600-115784800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr5:115748600-115783000	Weak transcription	Thymus	Thymus
4	chr5:115749400-115782000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr5:115750200-115779400	Weak transcription	Fetal Intestine Small	intestine
6	chr5:115752800-115779400	Weak transcription	Fetal Intestine Large	intestine
7	chr5:115757200-115782000	Weak transcription	Gastric	stomach
8	chr5:115759800-115776400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:115760000-115781400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr5:115768400-115777000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:115768400-115777800	Weak transcription	Ovary	ovary
12	chr5:115768400-115781800	Weak transcription	Fetal Lung	lung
13	chr5:115768800-115780600	Weak transcription	Primary B cells from cord blood	blood
14	chr5:115769800-115777800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:115772000-115781200	Enhancers	Brain Inferior Temporal Lobe	brain
16	chr5:115772000-115781800	Weak transcription	Spleen	Spleen
17	chr5:115772200-115779000	Enhancers	Brain Angular Gyrus	brain
18	chr5:115772200-115781400	Enhancers	Brain Hippocampus Middle	brain
19	chr5:115772400-115777000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr5:115772400-115781400	Enhancers	Brain Substantia Nigra	brain
21	chr5:115772600-115781200	Enhancers	Brain Cingulate Gyrus	brain
22	chr5:115772800-115776000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr5:115773200-115780600	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr5:115773200-115781000	Weak transcription	Primary T cells from cord blood	blood
25	chr5:115773200-115781200	Enhancers	Brain Anterior Caudate	brain
26	chr5:115773400-115776200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:115773400-115777400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:115773600-115781600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr5:115773800-115776800	Weak transcription	HepG2	liver
30	chr5:115773800-115777200	Weak transcription	Liver	Liver
31	chr5:115773800-115779600	Weak transcription	Fetal Kidney	kidney
32	chr5:115774000-115777400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:115774000-115779000	Enhancers	Fetal Muscle Leg	muscle
34	chr5:115774000-115780400	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr5:115774400-115777800	Weak transcription	Right Ventricle	heart
36	chr5:115774400-115778200	Enhancers	Psoas Muscle	Psoas
37	chr5:115774400-115778400	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr5:115774400-115779000	Enhancers	Fetal Heart	heart
39	chr5:115774400-115779400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr5:115774600-115778400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr5:115774600-115780200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr5:115774600-115780200	Weak transcription	Duodenum Mucosa	Duodenum
43	chr5:115774600-115811000	Weak transcription	Small Intestine	intestine
44	chr5:115774800-115775600	Enhancers	Stomach Smooth Muscle	stomach
45	chr5:115774800-115775800	Weak transcription	Left Ventricle	heart
46	chr5:115775000-115775800	Weak transcription	Fetal Muscle Trunk	muscle
47	chr5:115775000-115776200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr5:115775000-115776600	Weak transcription	Fetal Stomach	stomach
49	chr5:115775200-115776200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr5:115775200-115776600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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