The 2.0 version of rSNPBase

Variant report

Variant rs26603
Chromosome Location chr5:115790821-115790822
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:115774600-115811000 Weak transcription Small Intestine intestine
2 chr5:115782200-115798200 Weak transcription ES-WA7 Cell Line embryonic stem cell
3 chr5:115783600-115802200 Weak transcription Colonic Mucosa Colon
4 chr5:115783600-115802200 Weak transcription Pancreas Pancrea
5 chr5:115783600-115803400 Weak transcription Esophagus oesophagus
6 chr5:115783600-115813000 Weak transcription Spleen Spleen
7 chr5:115783600-115813200 Weak transcription Gastric stomach
8 chr5:115783600-115829600 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
9 chr5:115783800-115803200 Weak transcription Liver Liver
10 chr5:115784000-115791200 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr5:115784200-115796800 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr5:115784200-115800000 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
13 chr5:115784400-115791000 Genic enhancers HUES6 Cell Line embryonic stem cell
14 chr5:115785200-115800200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
15 chr5:115787600-115791000 Enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
16 chr5:115787600-115791000 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
17 chr5:115787800-115791600 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
18 chr5:115788000-115813200 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
19 chr5:115788400-115791800 Enhancers Fetal Stomach stomach
20 chr5:115788400-115792000 Genic enhancers HUES64 Cell Line embryonic stem cell
21 chr5:115788600-115791000 Enhancers Brain Dorsolateral Prefrontal Cortex brain
22 chr5:115788600-115791400 Enhancers HSMM muscle
23 chr5:115788600-115793800 Genic enhancers ES-I3 Cell Line embryonic stem cell
24 chr5:115788800-115791400 Enhancers HSMMtube muscle
25 chr5:115789000-115791000 Enhancers Fetal Brain Female brain
26 chr5:115789000-115791200 Genic enhancers Fetal Adrenal Gland Adrenal Gland
27 chr5:115789000-115791600 Weak transcription Rectal Mucosa Donor 31 rectum
28 chr5:115789000-115793800 Strong transcription H9 Cell Line embryonic stem cell
29 chr5:115789000-115795600 Strong transcription iPS-20b Cell Line embryonic stem cell
30 chr5:115789000-115797400 Strong transcription HUES48 Cell Line embryonic stem cell
31 chr5:115789000-115800200 Weak transcription Psoas Muscle Psoas
32 chr5:115789200-115791800 Genic enhancers Cortex derived primary cultured neurospheres brain
33 chr5:115789200-115796000 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
34 chr5:115789400-115795200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
35 chr5:115789600-115791000 Enhancers Primary B cells from cord blood blood
36 chr5:115789600-115791000 Flanking Active TSS Brain Hippocampus Middle brain
37 chr5:115789600-115791000 Enhancers Fetal Brain Male brain
38 chr5:115789600-115791000 Genic enhancers Fetal Muscle Leg muscle
39 chr5:115789600-115791000 Enhancers Left Ventricle heart
40 chr5:115789600-115791400 Enhancers Primary hematopoietic stem cells short term culture blood
41 chr5:115789600-115792000 Enhancers Primary hematopoietic stem cells blood
42 chr5:115789600-115792400 Enhancers Rectal Smooth Muscle rectum
43 chr5:115789600-115795400 Strong transcription H1 Cell Line embryonic stem cell
44 chr5:115789600-115812600 Strong transcription Fetal Intestine Large intestine
45 chr5:115789800-115791000 Flanking Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr5:115789800-115791000 Genic enhancers Placenta Placenta
47 chr5:115789800-115791000 Enhancers Fetal Thymus thymus
48 chr5:115789800-115791000 Enhancers Ovary ovary
49 chr5:115789800-115791000 Enhancers Thymus Thymus
50 chr5:115789800-115791200 Enhancers Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015