Variant report

Variant	rs191732
Chromosome Location	chr5:115812762-115812763
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10058506	0.87[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs11241394	0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs153742	0.89[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes]
rs153743	0.89[CHB][hapmap];0.83[JPT][hapmap];0.81[ASN][1000 genomes]
rs154555	0.89[CHB][hapmap];0.85[JPT][hapmap]
rs171797	1.00[CHB][hapmap];0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs2278262	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs258017	0.92[ASN][1000 genomes]
rs258018	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs258020	0.95[ASN][1000 genomes]
rs26591	0.85[CHD][hapmap];0.85[JPT][hapmap]
rs26594	0.88[CHD][hapmap];0.85[JPT][hapmap]
rs27495	0.83[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs27644	0.89[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs28028	0.96[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28029	0.88[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.87[ASN][1000 genomes]
rs28308	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34967	0.88[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.87[TSI][hapmap];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs40102	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs469035	1.00[CHB][hapmap];0.94[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115783600-115813000	Weak transcription	Spleen	Spleen
2	chr5:115783600-115813200	Weak transcription	Gastric	stomach
3	chr5:115783600-115829600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr5:115788000-115813200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr5:115791600-115838000	Weak transcription	Right Ventricle	heart
6	chr5:115796000-115833400	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:115797000-115834800	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr5:115797000-115838400	Strong transcription	Placenta	Placenta
9	chr5:115797400-115833800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:115797600-115834600	Strong transcription	H9 Cell Line	embryonic stem cell
11	chr5:115797800-115834800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr5:115798000-115833200	Strong transcription	HUES48 Cell Line	embryonic stem cell
13	chr5:115798000-115834600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
14	chr5:115799000-115830400	Strong transcription	HUES6 Cell Line	embryonic stem cell
15	chr5:115799400-115832000	Strong transcription	Fetal Muscle Trunk	muscle
16	chr5:115800200-115812800	Strong transcription	ES-I3 Cell Line	embryonic stem cell
17	chr5:115800800-115813200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr5:115801400-115824000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr5:115801400-115825000	Weak transcription	Psoas Muscle	Psoas
20	chr5:115803000-115815400	Weak transcription	Thymus	Thymus
21	chr5:115803400-115813200	Weak transcription	Fetal Thymus	thymus
22	chr5:115803400-115816000	Strong transcription	Cortex derived primary cultured neurospheres	brain
23	chr5:115803400-115833200	Strong transcription	iPS-15b Cell Line	embryonic stem cell
24	chr5:115803600-115813000	Weak transcription	Esophagus	oesophagus
25	chr5:115804600-115822600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr5:115804800-115813000	Weak transcription	Primary T cells from cord blood	blood
27	chr5:115808800-115818200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr5:115809800-115812800	Weak transcription	Fetal Stomach	stomach
29	chr5:115809800-115812800	Weak transcription	Lung	lung
30	chr5:115809800-115813000	Weak transcription	Pancreas	Pancrea
31	chr5:115809800-115813200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr5:115810200-115812800	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr5:115810800-115814200	Strong transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr5:115810800-115821200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr5:115811000-115813200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
36	chr5:115811000-115814200	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
37	chr5:115811000-115814800	Strong transcription	Colon Smooth Muscle	Colon
38	chr5:115811000-115815600	Strong transcription	Left Ventricle	heart
39	chr5:115811400-115813800	Strong transcription	Brain Cingulate Gyrus	brain
40	chr5:115811800-115813000	Strong transcription	Fetal Lung	lung
41	chr5:115811800-115813600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
42	chr5:115811800-115814000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
43	chr5:115811800-115814600	Strong transcription	Rectal Smooth Muscle	rectum
44	chr5:115811800-115818200	Strong transcription	Fetal Brain Female	brain
45	chr5:115812000-115813000	ZNF genes & repeats	Fetal Heart	heart
46	chr5:115812000-115813600	ZNF genes & repeats	Fetal Muscle Leg	muscle
47	chr5:115812000-115816000	Strong transcription	Brain Anterior Caudate	brain
48	chr5:115812200-115813200	ZNF genes & repeats	Primary B cells from cord blood	blood
49	chr5:115812200-115813200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
50	chr5:115812200-115813800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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