Variant report

Variant	rs2658802
Chromosome Location	chr11:93219829-93219830
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10831050	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10831053	1.00[ASN][1000 genomes]
rs11020381	0.89[EUR][1000 genomes]
rs11020389	1.00[ASN][1000 genomes]
rs11020403	1.00[ASN][1000 genomes]
rs11820614	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16834	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1869912	1.00[ASN][1000 genomes]
rs2045313	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2045459	0.96[EUR][1000 genomes]
rs2045461	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2045462	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2198797	1.00[ASN][1000 genomes]
rs2605591	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2605592	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2605594	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2605595	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2605598	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2605599	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2605601	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2605602	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2605605	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608273	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608277	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2608278	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2658794	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2658795	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2658796	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2658800	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2939621	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6483246	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7114771	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7124358	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs897556	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93207000-93239000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr11:93207800-93220000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr11:93208200-93223200	Weak transcription	GM12878-XiMat	blood
4	chr11:93209000-93231400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr11:93209000-93235200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:93209200-93229200	Weak transcription	Dnd41	blood
7	chr11:93209600-93229400	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr11:93210600-93220000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr11:93210600-93231600	Weak transcription	A549	lung
10	chr11:93211000-93225800	Weak transcription	Thymus	Thymus
11	chr11:93211000-93253400	Weak transcription	Primary T cells from cord blood	blood
12	chr11:93211200-93222000	Weak transcription	Adipose Nuclei	Adipose
13	chr11:93211600-93220400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr11:93211600-93223000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:93211600-93243800	Weak transcription	Fetal Thymus	thymus
16	chr11:93211800-93220200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:93212000-93220000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr11:93212200-93220600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:93212200-93221200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:93212200-93222800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:93212200-93234800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr11:93212400-93222600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr11:93212400-93225800	Weak transcription	Sigmoid Colon	Sigmoid Colon
24	chr11:93213000-93220400	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr11:93213000-93221200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr11:93213000-93221400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr11:93214400-93221200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr11:93214800-93220200	Weak transcription	Aorta	Aorta
29	chr11:93214800-93234400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr11:93215200-93220800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr11:93215200-93221800	Weak transcription	Gastric	stomach
32	chr11:93215200-93225400	Weak transcription	Rectal Mucosa Donor 31	rectum
33	chr11:93215400-93222600	Enhancers	Fetal Lung	lung
34	chr11:93215600-93225800	Weak transcription	Colonic Mucosa	Colon
35	chr11:93215600-93226000	Weak transcription	Stomach Mucosa	stomach
36	chr11:93215800-93220200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr11:93216000-93221800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr11:93216000-93224600	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr11:93216600-93228600	Enhancers	Liver	Liver
40	chr11:93216800-93221800	Weak transcription	Spleen	Spleen
41	chr11:93217000-93224000	Weak transcription	Duodenum Mucosa	Duodenum
42	chr11:93217200-93220000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr11:93217200-93226000	Enhancers	H1 Cell Line	embryonic stem cell
44	chr11:93217600-93220200	Enhancers	Stomach Smooth Muscle	stomach
45	chr11:93217800-93220600	Enhancers	Colon Smooth Muscle	Colon
46	chr11:93218000-93220000	Enhancers	Fetal Muscle Leg	muscle
47	chr11:93218000-93220400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:93218000-93220600	Enhancers	Pancreas	Pancrea
49	chr11:93218400-93220600	Enhancers	Left Ventricle	heart
50	chr11:93218400-93220800	Enhancers	Rectal Smooth Muscle	rectum

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