Variant report

Variant	rs2939621
Chromosome Location	chr11:93206655-93206656
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10831050	0.82[EUR][1000 genomes]
rs11020381	0.82[EUR][1000 genomes]
rs11820614	0.93[EUR][1000 genomes]
rs16834	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2045313	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2045459	0.94[EUR][1000 genomes]
rs2045461	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2045462	0.89[EUR][1000 genomes]
rs2605591	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2605592	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2605594	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2605595	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2605598	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2605599	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2605601	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2605602	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2605605	0.89[EUR][1000 genomes]
rs2608273	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2608277	0.89[EUR][1000 genomes]
rs2608278	0.89[EUR][1000 genomes]
rs2658794	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2658795	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2658796	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2658800	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2658802	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6483246	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898181	chr11:93072843-93662459	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	119 gene(s)	inside rSNPs	diseases
3	nsv1039623	chr11:93141461-93328739	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv2760208	chr11:93172673-93266594	Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:93200600-93214400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:93201600-93207600	Weak transcription	Pancreas	Pancrea
3	chr11:93206200-93210600	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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