Variant report
| Variant | rs2658974 |
|---|---|
| Chromosome Location | chr12:45272470-45272471 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:1)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:1 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | STAT3 | chr12:45272230-45272590 | MCF10A-Er-Src | breast: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| NELL2 | TF binding region |
rSNPs within LD-proxies of this variant (count:19)
| rs_ID | r2[population] |
|---|---|
| rs10736022 | 1.00[AFR][1000 genomes] |
| rs1376125 | 0.84[AFR][1000 genomes] |
| rs1450550 | 0.80[AFR][1000 genomes] |
| rs1964487 | 1.00[AFR][1000 genomes] |
| rs2658953 | 0.96[AFR][1000 genomes] |
| rs2658962 | 1.00[AFR][1000 genomes] |
| rs2658968 | 1.00[AFR][1000 genomes] |
| rs2658973 | 1.00[AFR][1000 genomes] |
| rs2703039 | 1.00[AFR][1000 genomes] |
| rs2703041 | 1.00[AFR][1000 genomes] |
| rs2703045 | 1.00[AFR][1000 genomes] |
| rs2710426 | 0.92[AFR][1000 genomes] |
| rs2710456 | 1.00[AFR][1000 genomes] |
| rs4257041 | 1.00[AFR][1000 genomes] |
| rs4306333 | 1.00[AFR][1000 genomes] |
| rs7132477 | 1.00[AFR][1000 genomes] |
| rs7964617 | 1.00[AFR][1000 genomes] |
| rs7964721 | 1.00[AFR][1000 genomes] |
| rs7968547 | 1.00[AFR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1036926 | chr12:45131884-45273648 | Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 2 | nsv541484 | chr12:45131884-45273648 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
