Variant report

Variant	rs2710426
Chromosome Location	chr12:45268583-45268584
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10736022	0.92[AFR][1000 genomes]
rs1224443	1.00[YRI][hapmap]
rs1964487	0.92[AFR][1000 genomes]
rs2658953	0.89[AFR][1000 genomes]
rs2658962	0.92[AFR][1000 genomes]
rs2658968	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2658973	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs2658974	0.92[AFR][1000 genomes]
rs2703039	0.92[AFR][1000 genomes]
rs2703041	0.92[AFR][1000 genomes]
rs2703045	0.92[AFR][1000 genomes]
rs2710456	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs4257041	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs4306333	0.92[AFR][1000 genomes]
rs7132477	0.92[AFR][1000 genomes]
rs7964617	0.92[AFR][1000 genomes]
rs7964721	0.92[AFR][1000 genomes]
rs7968547	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832394	chr12:45077573-45269305	Bivalent Enhancer Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
2	nsv1036926	chr12:45131884-45273648	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
3	nsv541484	chr12:45131884-45273648	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:45263000-45269000	Active TSS	Fetal Brain Female	brain
2	chr12:45264800-45271200	Active TSS	Fetal Brain Male	brain
3	chr12:45266000-45270600	Active TSS	Primary T killer naive cells fromperipheralblood	blood
4	chr12:45266400-45268600	Active TSS	Brain Angular Gyrus	brain
5	chr12:45266400-45269200	Active TSS	Brain Anterior Caudate	brain
6	chr12:45266800-45268800	Active TSS	Brain Hippocampus Middle	brain
7	chr12:45266800-45269200	Active TSS	Brain Inferior Temporal Lobe	brain
8	chr12:45266800-45270800	Active TSS	Primary T killer memory cells from peripheral blood	blood
9	chr12:45267000-45268800	Active TSS	Primary T helper naive cells from peripheral blood	blood
10	chr12:45267000-45269200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
11	chr12:45267200-45271000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr12:45267200-45271400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr12:45267800-45268600	Active TSS	Primary T cells fromperipheralblood	blood
14	chr12:45267800-45268800	Active TSS	Brain Germinal Matrix	brain
15	chr12:45267800-45271000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
16	chr12:45268000-45268600	Active TSS	Brain Cingulate Gyrus	brain
17	chr12:45268000-45268600	Bivalent Enhancer	Duodenum Mucosa	Duodenum
18	chr12:45268000-45268800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
19	chr12:45268000-45268800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
20	chr12:45268000-45268800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
21	chr12:45268000-45270000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
22	chr12:45268000-45270800	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:45268000-45270800	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr12:45268000-45271000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
25	chr12:45268000-45271200	Active TSS	H9 Cell Line	embryonic stem cell
26	chr12:45268200-45268600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
27	chr12:45268200-45268600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
28	chr12:45268200-45268600	Bivalent Enhancer	Duodenum Smooth Muscle	Duodenum
29	chr12:45268200-45268800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
30	chr12:45268200-45268800	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
31	chr12:45268200-45269000	Flanking Bivalent TSS/Enh	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr12:45268200-45271200	Active TSS	H1 Cell Line	embryonic stem cell
33	chr12:45268400-45268600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
34	chr12:45268400-45268600	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
35	chr12:45268400-45268600	Bivalent Enhancer	Primary T regulatory cells fromperipheralblood	blood
36	chr12:45268400-45268600	Flanking Active TSS	Fetal Intestine Large	intestine
37	chr12:45268400-45268600	Flanking Active TSS	Fetal Intestine Small	intestine
38	chr12:45268400-45268800	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr12:45268400-45269200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
40	chr12:45268400-45269200	Bivalent/Poised TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr12:45268400-45269400	Bivalent/Poised TSS	Primary T helper memory cells from peripheral blood 1	blood
42	chr12:45268400-45269600	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--

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