Variant report

Variant	rs2660644
Chromosome Location	chr1:209424260-209424261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10779504	0.91[EUR][1000 genomes]
rs10863765	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1354849	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1507334	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2135817	0.84[EUR][1000 genomes]
rs6419460	0.81[EUR][1000 genomes]
rs6690080	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6693967	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209421600-209426600	Enhancers	Fetal Brain Male	brain
2	chr1:209421800-209426200	Enhancers	Fetal Brain Female	brain
3	chr1:209422400-209424400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:209422600-209424800	Enhancers	Brain Germinal Matrix	brain
5	chr1:209423800-209424800	Enhancers	HSMM	muscle
6	chr1:209424000-209425200	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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