Variant report

Variant	rs10863765
Chromosome Location	chr1:209422438-209422439
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:209380711..209382110-chr1:209421741..209422984,5	MCF-7	breast:
2	chr1:209420639..209424280-chr1:209607063..209609877,4	MCF-7	breast:
3	chr1:209375950..209376832-chr1:209421724..209422654,5	MCF-7	breast:
4	chr1:209422329..209425233-chr1:209428523..209430136,2	MCF-7	breast:
5	chr1:209421771..209422737-chr1:209527455..209528257,2	K562	blood:
6	chr1:209421788..209422593-chr1:209527401..209528229,3	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10779504	1.00[CEU][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1354849	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1507334	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1933601	0.85[EUR][1000 genomes]
rs2135817	0.85[EUR][1000 genomes]
rs2250701	1.00[CHB][hapmap]
rs2660644	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2788149	0.82[ASN][1000 genomes]
rs2788152	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs2788154	0.82[ASN][1000 genomes]
rs2800933	0.84[ASN][1000 genomes]
rs2800934	0.82[ASN][1000 genomes]
rs6419460	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6658956	1.00[CHB][hapmap]
rs6672407	1.00[CHB][hapmap]
rs6674807	0.85[EUR][1000 genomes]
rs6690080	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6693967	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9943143	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209421200-209423000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr1:209421200-209423200	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr1:209421200-209423600	Enhancers	H1 Cell Line	embryonic stem cell
4	chr1:209421200-209424000	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr1:209421400-209424200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr1:209421600-209423600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr1:209421600-209426600	Enhancers	Fetal Brain Male	brain
8	chr1:209421800-209423000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr1:209421800-209426200	Enhancers	Fetal Brain Female	brain
10	chr1:209422000-209423000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr1:209422000-209423400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr1:209422200-209422800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:209422200-209422800	Enhancers	Fetal Kidney	kidney
14	chr1:209422200-209422800	Enhancers	HMEC	breast
15	chr1:209422200-209423000	Enhancers	Hela-S3	cervix
16	chr1:209422200-209423200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:209422200-209423400	Enhancers	HSMM	muscle
18	chr1:209422400-209423200	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr1:209422400-209423400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr1:209422400-209423800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr1:209422400-209423800	Enhancers	Fetal Stomach	stomach
22	chr1:209422400-209424000	Enhancers	Fetal Heart	heart
23	chr1:209422400-209424000	Enhancers	Pancreatic Islets	Pancreatic Islet
24	chr1:209422400-209424400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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