Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1933612	0.86[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap]
rs1933619	0.84[EUR][1000 genomes]
rs2266024	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2788152	0.83[CEU][hapmap];0.85[CHD][hapmap]
rs2788158	0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2788159	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2788162	0.86[EUR][1000 genomes]
rs2788168	0.83[EUR][1000 genomes]
rs2788170	0.84[EUR][1000 genomes]
rs2800919	0.85[EUR][1000 genomes]
rs2970555	0.84[EUR][1000 genomes]
rs2970556	0.84[EUR][1000 genomes]
rs2970560	0.84[EUR][1000 genomes]
rs2970563	0.83[EUR][1000 genomes]
rs2996683	0.84[EUR][1000 genomes]
rs2996687	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2996688	0.83[EUR][1000 genomes]
rs34523921	0.82[EUR][1000 genomes]
rs4396124	0.81[EUR][1000 genomes]
rs4844466	0.84[ASN][1000 genomes]
rs6658956	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs6672407	1.00[CHB][hapmap];0.86[GIH][hapmap];0.86[JPT][hapmap];0.93[MEX][hapmap]
rs6698786	0.84[EUR][1000 genomes]
rs6704132	0.85[JPT][hapmap]
rs71636106	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832481	chr1:209371276-209540333	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv832492	chr1:209383771-209589312	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:209394000-209397600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr1:209394000-209397600	Weak transcription	NHEK	skin
3	chr1:209395800-209397200	Weak transcription	Fetal Lung	lung
4	chr1:209396400-209399800	Weak transcription	Fetal Brain Male	brain
5	chr1:209396600-209398600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr1:209396800-209397200	Flanking Active TSS	Dnd41	blood

Quick Search: