Variant report

Variant	rs2664025
Chromosome Location	chr4:48238359-48238360
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:48222033..48225544-chr4:48235946..48240353,4	K562	blood:
2	chr4:48206028..48209307-chr4:48238256..48241207,3	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10938525	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11724904	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11726643	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11727166	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11732863	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11735909	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11932711	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11933797	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11934755	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11945482	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11947315	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1472970	0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17655431	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17655449	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2353296	0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2457409	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4340766	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55702720	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58275144	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58351439	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58620171	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61010385	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6447628	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6835303	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6835363	0.92[ASN][1000 genomes]
rs6835615	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6845740	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6857308	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73817607	1.00[EUR][1000 genomes]
rs7655057	0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7682629	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs906901	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs925288	0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482316	chr4:48151953-48338746	Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv2763359	chr4:48189710-48290233	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
4	nsv1006610	chr4:48209294-48415387	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv537085	chr4:48209294-48415387	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48220400-48242200	Weak transcription	Aorta	Aorta
2	chr4:48230000-48245600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr4:48236600-48240000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:48237000-48239800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:48237000-48239800	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr4:48237000-48246200	Weak transcription	Primary B cells from cord blood	blood
7	chr4:48237200-48239400	Weak transcription	Primary hematopoietic stem cells	blood
8	chr4:48237200-48240000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr4:48237200-48240200	Weak transcription	Stomach Mucosa	stomach
10	chr4:48237400-48239600	Weak transcription	Primary neutrophils fromperipheralblood	blood
11	chr4:48237400-48239800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr4:48237400-48239800	Weak transcription	K562	blood
13	chr4:48237800-48239000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:48238000-48239400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr4:48238200-48239200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr4:48238200-48239600	Weak transcription	Hela-S3	cervix

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links