Variant report

Variant	rs906901
Chromosome Location	chr4:48235409-48235410
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10938525	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11724904	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11726643	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11727166	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11732863	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11735909	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11932711	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11933797	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11934755	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11945482	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11947315	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1472970	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17655431	0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17655449	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2353296	0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2457409	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2664025	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4340766	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55702720	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58275144	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58351439	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs58620171	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61010385	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6447628	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6835303	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6835363	0.91[ASN][1000 genomes]
rs6835615	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6845740	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6857308	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73817607	0.98[EUR][1000 genomes]
rs7655057	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7682629	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs925288	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
2	nsv482316	chr4:48151953-48338746	Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	esv2763359	chr4:48189710-48290233	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	20 gene(s)	inside rSNPs	diseases
4	nsv1006610	chr4:48209294-48415387	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
5	nsv537085	chr4:48209294-48415387	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48220400-48242200	Weak transcription	Aorta	Aorta
2	chr4:48228800-48236200	Weak transcription	Primary B cells from cord blood	blood
3	chr4:48230000-48236400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr4:48230000-48236400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr4:48230000-48236600	Weak transcription	Stomach Mucosa	stomach
6	chr4:48230000-48245600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr4:48233800-48235600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
8	chr4:48234400-48237400	Enhancers	K562	blood
9	chr4:48235000-48235600	Enhancers	Fetal Thymus	thymus
10	chr4:48235200-48237000	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr4:48235200-48237200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr4:48235200-48237800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr4:48235400-48237400	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr4:48235400-48238200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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