Variant report

Variant	rs2664239
Chromosome Location	chr2:211389269-211389270
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10184506	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs10195425	1.00[CEU][hapmap];0.80[AMR][1000 genomes]
rs10932336	0.82[ASN][1000 genomes]
rs10932340	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12694200	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13005638	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13013076	0.85[CEU][hapmap];0.82[JPT][hapmap]
rs1509816	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1858194	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1858195	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2160851	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2287426	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2287427	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs2370962	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34374637	0.80[AMR][1000 genomes]
rs35003355	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3732058	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3755186	1.00[CEU][hapmap]
rs3755187	1.00[CEU][hapmap]
rs3770686	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs3770688	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs3770693	1.00[CEU][hapmap];0.80[EUR][1000 genomes]
rs3770696	1.00[CEU][hapmap]
rs3845634	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4672580	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4672581	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4672582	0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57718949	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62203712	0.97[ASN][1000 genomes]
rs6749711	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6752530	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7590759	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs759688	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs759689	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs918234	1.00[CEU][hapmap];0.93[CHB][hapmap];0.95[JPT][hapmap];0.91[YRI][hapmap]
rs9941507	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211384600-211392200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr2:211384600-211394200	Weak transcription	Brain Angular Gyrus	brain
3	chr2:211384800-211389400	Weak transcription	Fetal Intestine Small	intestine
4	chr2:211387200-211390000	Enhancers	HepG2	liver
5	chr2:211387400-211393800	Enhancers	Liver	Liver
6	chr2:211388400-211393000	Enhancers	Fetal Intestine Large	intestine

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