Variant report

Variant	rs62203712
Chromosome Location	chr2:211397410-211397411
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10932340	0.95[ASN][1000 genomes]
rs12694200	0.83[ASN][1000 genomes]
rs1509816	0.83[ASN][1000 genomes]
rs1858194	0.83[ASN][1000 genomes]
rs1858195	0.83[ASN][1000 genomes]
rs2160851	0.85[ASN][1000 genomes]
rs2370962	0.87[ASN][1000 genomes]
rs2664239	0.97[ASN][1000 genomes]
rs3845634	0.88[ASN][1000 genomes]
rs4672580	0.82[ASN][1000 genomes]
rs4672581	0.83[ASN][1000 genomes]
rs4672582	0.83[ASN][1000 genomes]
rs57718949	0.93[ASN][1000 genomes]
rs6749711	0.80[ASN][1000 genomes]
rs6752530	0.87[ASN][1000 genomes]
rs7590759	0.97[ASN][1000 genomes]
rs759688	0.82[ASN][1000 genomes]
rs759689	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3398091	chr2:211315261-211634200	Active TSS Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:211394400-211399400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr2:211394400-211399600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr2:211395000-211399200	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr2:211395200-211398000	Enhancers	Liver	Liver
5	chr2:211395400-211399400	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr2:211395400-211399600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr2:211396400-211401400	Weak transcription	HepG2	liver
8	chr2:211396800-211399000	Enhancers	Duodenum Mucosa	Duodenum
9	chr2:211396800-211404200	Enhancers	Fetal Intestine Small	intestine
10	chr2:211397000-211404400	Enhancers	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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