Variant report

Variant	rs2664257
Chromosome Location	chr2:191162573-191162574
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:191160275..191162665-chr2:191211268..191214230,2	K562	blood:
2	chr2:191155862..191157478-chr2:191161113..191163862,2	K562	blood:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10168769	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10182490	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10192319	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10196444	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10199308	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10204936	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11900898	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13406328	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13414825	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1366676	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1595997	0.88[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16832459	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2067383	1.00[EUR][1000 genomes]
rs2119463	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2119464	0.80[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2195466	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2582734	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2582741	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2582756	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2582768	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2664250	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2664254	0.88[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291406	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs291408	0.85[ASN][1000 genomes]
rs291416	0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs291417	0.84[AFR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs291433	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291443	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs291454	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs291465	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs291473	1.00[EUR][1000 genomes]
rs2966469	0.88[AFR][1000 genomes];0.99[ASN][1000 genomes]
rs59924974	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875621	chr2:191117120-191177131	Weak transcription ZNF genes & repeats Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191060800-191180000	Weak transcription	Small Intestine	intestine
2	chr2:191105000-191180000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr2:191108200-191180000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr2:191109800-191163000	Weak transcription	Brain Germinal Matrix	brain
5	chr2:191115600-191182000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr2:191116600-191183200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr2:191117400-191183600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr2:191121000-191181400	Weak transcription	Brain Angular Gyrus	brain
9	chr2:191123200-191177600	Weak transcription	Colonic Mucosa	Colon
10	chr2:191132600-191180200	Weak transcription	NH-A	brain
11	chr2:191135600-191183200	Weak transcription	Fetal Brain Male	brain
12	chr2:191137400-191183200	Weak transcription	A549	lung
13	chr2:191140000-191165600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr2:191141800-191183000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr2:191142400-191173200	Weak transcription	NHLF	lung
16	chr2:191142600-191180200	Weak transcription	Hela-S3	cervix
17	chr2:191142600-191181200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr2:191143000-191167000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:191143000-191183000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr2:191144400-191165600	Weak transcription	Stomach Mucosa	stomach
21	chr2:191145200-191164800	Weak transcription	Fetal Brain Female	brain
22	chr2:191145200-191166200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr2:191145600-191183200	Weak transcription	HUVEC	blood vessel
24	chr2:191145800-191166000	Weak transcription	Right Ventricle	heart
25	chr2:191145800-191183000	Weak transcription	HMEC	breast
26	chr2:191146000-191171000	Weak transcription	Psoas Muscle	Psoas
27	chr2:191146000-191181200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr2:191146000-191181800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr2:191146200-191165800	Weak transcription	Brain Substantia Nigra	brain
30	chr2:191146400-191172600	Weak transcription	HSMMtube	muscle
31	chr2:191146600-191166800	Weak transcription	Colon Smooth Muscle	Colon
32	chr2:191149000-191173400	Weak transcription	Muscle Satellite Cultured Cells	--
33	chr2:191149200-191176600	Weak transcription	NHEK	skin
34	chr2:191149200-191183200	Weak transcription	Fetal Kidney	kidney
35	chr2:191149800-191162800	Weak transcription	Primary neutrophils fromperipheralblood	blood
36	chr2:191150800-191173200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr2:191150800-191173800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr2:191151000-191170800	Weak transcription	Lung	lung
39	chr2:191151000-191182800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr2:191151000-191183000	Weak transcription	Esophagus	oesophagus
41	chr2:191151200-191166800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr2:191151200-191171000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr2:191151400-191164600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr2:191151400-191179200	Weak transcription	Pancreas	Pancrea
45	chr2:191151400-191179800	Weak transcription	Fetal Heart	heart
46	chr2:191151400-191180800	Weak transcription	Aorta	Aorta
47	chr2:191151400-191183000	Weak transcription	Gastric	stomach
48	chr2:191151400-191183000	Weak transcription	Rectal Smooth Muscle	rectum
49	chr2:191151400-191183600	Weak transcription	Thymus	Thymus
50	chr2:191151600-191165800	Weak transcription	K562	blood

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