Variant report

Variant	rs2668142
Chromosome Location	chr2:206249454-206249455
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:206248394..206251086-chr2:206251822..206254377,2	MCF-7	breast:

Extended variants
information (count: 99 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10490290	0.82[ASN][1000 genomes]
rs10490292	0.81[ASN][1000 genomes]
rs10490293	0.82[ASN][1000 genomes]
rs10804147	0.80[ASN][1000 genomes]
rs10804148	0.87[ASN][1000 genomes]
rs10932104	0.80[ASN][1000 genomes]
rs10932105	0.82[ASN][1000 genomes]
rs10932106	0.82[ASN][1000 genomes]
rs10932107	0.82[ASN][1000 genomes]
rs10932108	0.82[ASN][1000 genomes]
rs10932109	0.83[ASN][1000 genomes]
rs11676344	0.81[ASN][1000 genomes]
rs11676518	0.82[ASN][1000 genomes]
rs11676519	0.82[ASN][1000 genomes]
rs11676529	0.82[ASN][1000 genomes]
rs11677457	0.80[ASN][1000 genomes]
rs11686270	0.82[ASN][1000 genomes]
rs11690480	0.80[ASN][1000 genomes]
rs11690561	0.80[ASN][1000 genomes]
rs11691345	0.80[ASN][1000 genomes]
rs11695465	0.80[ASN][1000 genomes]
rs12373584	0.82[ASN][1000 genomes]
rs12373610	0.82[ASN][1000 genomes]
rs12464688	0.82[ASN][1000 genomes]
rs12468975	0.81[ASN][1000 genomes]
rs12470003	0.82[ASN][1000 genomes]
rs12470079	0.82[ASN][1000 genomes]
rs12472815	0.81[ASN][1000 genomes]
rs12476682	0.80[ASN][1000 genomes]
rs12623757	0.80[ASN][1000 genomes]
rs12989507	0.80[ASN][1000 genomes]
rs12995657	0.82[ASN][1000 genomes]
rs13000324	0.82[ASN][1000 genomes]
rs13009974	0.80[ASN][1000 genomes]
rs13011880	0.80[ASN][1000 genomes]
rs13011981	0.80[ASN][1000 genomes]
rs13017922	0.87[ASN][1000 genomes]
rs13021602	0.82[ASN][1000 genomes]
rs13024741	0.87[ASN][1000 genomes]
rs13028215	0.85[ASN][1000 genomes]
rs13033820	0.85[ASN][1000 genomes]
rs1398053	0.82[ASN][1000 genomes]
rs1398054	0.82[ASN][1000 genomes]
rs1511873	0.80[ASN][1000 genomes]
rs1511874	0.80[ASN][1000 genomes]
rs1606237	0.85[ASN][1000 genomes]
rs1606238	0.80[ASN][1000 genomes]
rs1606239	0.80[ASN][1000 genomes]
rs17201041	0.80[ASN][1000 genomes]
rs1849226	0.85[ASN][1000 genomes]
rs1861513	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1861514	0.80[ASN][1000 genomes]
rs1877338	0.82[ASN][1000 genomes]
rs1877339	0.82[ASN][1000 genomes]
rs1912845	0.82[ASN][1000 genomes]
rs1990667	0.92[EUR][1000 genomes]
rs2041877	0.82[ASN][1000 genomes]
rs2080418	0.80[ASN][1000 genomes]
rs2080419	0.80[ASN][1000 genomes]
rs2137176	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2216176	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2247282	0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2336420	0.82[ASN][1000 genomes]
rs2541160	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2668144	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2668145	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2668146	0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2668148	0.92[EUR][1000 genomes]
rs34332011	0.83[ASN][1000 genomes]
rs34486316	0.82[ASN][1000 genomes]
rs35337631	0.82[ASN][1000 genomes]
rs35655292	0.85[ASN][1000 genomes]
rs4505506	0.80[ASN][1000 genomes]
rs4595957	0.83[ASN][1000 genomes]
rs4673320	0.80[ASN][1000 genomes]
rs4673323	0.82[ASN][1000 genomes]
rs4673324	0.82[ASN][1000 genomes]
rs4673325	0.81[ASN][1000 genomes]
rs4673326	0.82[ASN][1000 genomes]
rs4673327	0.82[ASN][1000 genomes]
rs4673328	0.82[ASN][1000 genomes]
rs4673329	0.83[ASN][1000 genomes]
rs4673330	0.83[ASN][1000 genomes]
rs4675519	0.80[ASN][1000 genomes]
rs62171506	0.80[ASN][1000 genomes]
rs66583439	0.82[ASN][1000 genomes]
rs6740963	0.82[ASN][1000 genomes]
rs6755865	0.82[ASN][1000 genomes]
rs849198	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs849200	0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs849207	0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs849208	0.93[EUR][1000 genomes]
rs849250	0.85[EUR][1000 genomes]
rs964896	0.82[ASN][1000 genomes]
rs964897	0.82[ASN][1000 genomes]
rs979187	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv962519	chr2:206239854-206250466	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv584244	chr2:206247450-206378392	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206249000-206250200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr2:206249000-206250800	Weak transcription	NHDF-Ad	bronchial
3	chr2:206249400-206252400	Weak transcription	Rectal Smooth Muscle	rectum

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