Variant report

Variant	rs35655292
Chromosome Location	chr2:206248179-206248180
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 69 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:66)

rs_ID	r²[population]
rs10490295	0.82[EUR][1000 genomes]
rs10804148	0.82[ASN][1000 genomes]
rs11691345	0.81[ASN][1000 genomes]
rs1207434	0.84[ASN][1000 genomes]
rs1207435	0.85[ASN][1000 genomes]
rs1207436	0.85[ASN][1000 genomes]
rs1207437	0.85[ASN][1000 genomes]
rs1207438	0.85[ASN][1000 genomes]
rs12464755	0.82[EUR][1000 genomes]
rs12468755	0.83[EUR][1000 genomes]
rs12468794	0.83[EUR][1000 genomes]
rs13004164	0.81[EUR][1000 genomes]
rs13011880	0.85[EUR][1000 genomes]
rs13011981	0.83[EUR][1000 genomes]
rs13015412	0.91[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13017922	0.91[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13022810	0.81[EUR][1000 genomes]
rs13024741	0.82[ASN][1000 genomes]
rs13024952	0.85[ASN][1000 genomes]
rs13028215	0.80[ASN][1000 genomes]
rs13033820	0.80[ASN][1000 genomes]
rs1606237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1849226	0.80[ASN][1000 genomes]
rs1861513	0.93[ASN][1000 genomes]
rs1990667	0.89[ASN][1000 genomes]
rs2080419	0.85[EUR][1000 genomes]
rs2137176	0.99[ASN][1000 genomes]
rs2193077	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2216176	0.99[ASN][1000 genomes]
rs2247282	0.97[ASN][1000 genomes]
rs2541151	0.85[ASN][1000 genomes]
rs2541152	0.85[ASN][1000 genomes]
rs2541153	0.85[ASN][1000 genomes]
rs2541154	0.85[ASN][1000 genomes]
rs2541160	0.93[ASN][1000 genomes]
rs2668142	0.85[ASN][1000 genomes]
rs2668144	0.93[ASN][1000 genomes]
rs2668145	0.93[ASN][1000 genomes]
rs2668146	0.93[ASN][1000 genomes]
rs2668148	0.91[ASN][1000 genomes]
rs2704644	0.85[ASN][1000 genomes]
rs35550118	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3845806	0.82[EUR][1000 genomes]
rs3928642	0.82[EUR][1000 genomes]
rs4673323	0.85[EUR][1000 genomes]
rs4675512	0.83[ASN][1000 genomes]
rs4675515	0.81[EUR][1000 genomes]
rs62171496	0.85[ASN][1000 genomes]
rs66583439	0.89[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs849189	0.85[ASN][1000 genomes]
rs849193	0.84[ASN][1000 genomes]
rs849194	0.85[ASN][1000 genomes]
rs849198	0.93[ASN][1000 genomes]
rs849200	0.93[ASN][1000 genomes]
rs849207	0.93[ASN][1000 genomes]
rs849208	0.91[ASN][1000 genomes]
rs849216	0.87[ASN][1000 genomes]
rs849218	0.85[ASN][1000 genomes]
rs849219	0.85[ASN][1000 genomes]
rs849220	0.86[ASN][1000 genomes]
rs849221	0.85[ASN][1000 genomes]
rs849222	0.85[ASN][1000 genomes]
rs849223	0.85[ASN][1000 genomes]
rs849224	0.80[ASN][1000 genomes]
rs849250	0.88[ASN][1000 genomes]
rs907462	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012780	chr2:206124954-206546271	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv962519	chr2:206239854-206250466	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv584244	chr2:206247450-206378392	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:206247200-206248600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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