Variant report

Variant	rs26689
Chromosome Location	chr5:58542675-58542676
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs153985	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs181915	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs255557	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs26694	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs26700	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs26703	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs26710	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs26713	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs26714	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs26715	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs27549	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs27670	0.98[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs27695	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs27773	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs27957	0.89[EUR][1000 genomes]
rs28055	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35304	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35308	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35309	0.91[ASN][1000 genomes]
rs35310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs455969	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs466742	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830363	chr5:57893949-58555491	Weak transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv598252	chr5:58487764-58618889	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv1025807	chr5:58520050-58548231	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv520721	chr5:58520735-58558388	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58527400-58549800	Weak transcription	Aorta	Aorta
2	chr5:58535600-58551800	Weak transcription	HUVEC	blood vessel
3	chr5:58537400-58543600	Weak transcription	Left Ventricle	heart
4	chr5:58537600-58548600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:58537600-58553000	Weak transcription	Duodenum Mucosa	Duodenum
6	chr5:58539000-58543000	Weak transcription	Small Intestine	intestine
7	chr5:58540800-58542800	Enhancers	Brain Angular Gyrus	brain
8	chr5:58540800-58543000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr5:58540800-58543200	Enhancers	Colon Smooth Muscle	Colon
10	chr5:58540800-58543800	Enhancers	Fetal Lung	lung
11	chr5:58541000-58543000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr5:58541000-58543400	Enhancers	Osteobl	bone
13	chr5:58541000-58545400	Enhancers	Rectal Smooth Muscle	rectum
14	chr5:58541200-58543200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr5:58541200-58558400	Weak transcription	Pancreas	Pancrea
16	chr5:58541400-58543200	Enhancers	Muscle Satellite Cultured Cells	--
17	chr5:58541600-58542800	Weak transcription	Brain Substantia Nigra	brain
18	chr5:58541600-58560000	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr5:58541600-58562400	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr5:58541800-58542800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr5:58541800-58542800	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr5:58541800-58543200	Weak transcription	Fetal Intestine Large	intestine
23	chr5:58541800-58543400	Weak transcription	Fetal Intestine Small	intestine
24	chr5:58541800-58543400	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr5:58541800-58543600	Weak transcription	Psoas Muscle	Psoas
26	chr5:58541800-58543600	Weak transcription	Right Atrium	heart
27	chr5:58541800-58562800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr5:58542000-58543200	Flanking Active TSS	A549	lung
29	chr5:58542200-58544400	Enhancers	Fetal Heart	heart
30	chr5:58542200-58551600	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr5:58542600-58544400	Enhancers	Fetal Kidney	kidney
32	chr5:58542600-58544400	Genic enhancers	Hela-S3	cervix
33	chr5:58542600-58548600	Weak transcription	Stomach Smooth Muscle	stomach

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