Variant report

Variant	rs27695
Chromosome Location	chr5:58563005-58563006
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs153985	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs181915	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.95[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs255557	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs255633	0.87[YRI][hapmap]
rs256750	0.87[YRI][hapmap]
rs256752	0.88[YRI][hapmap]
rs26689	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs26694	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs26700	0.91[CEU][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs26703	0.92[CEU][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap]
rs26710	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs26713	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs26714	0.91[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs26715	0.92[CEU][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs27549	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs27670	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs27773	0.96[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs27957	0.91[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs28055	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35304	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs35308	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs35309	1.00[JPT][hapmap]
rs35310	1.00[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs40444	0.86[YRI][hapmap]
rs455969	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs466742	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv598252	chr5:58487764-58618889	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv1023628	chr5:58557950-58757438	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:58553800-58568600	Weak transcription	Fetal Muscle Leg	muscle
2	chr5:58558400-58564400	Enhancers	Fetal Heart	heart
3	chr5:58559200-58564200	Weak transcription	Pancreas	Pancrea
4	chr5:58560200-58566600	Enhancers	Rectal Smooth Muscle	rectum
5	chr5:58560400-58570000	Weak transcription	Fetal Lung	lung
6	chr5:58560600-58563800	Enhancers	Fetal Intestine Large	intestine
7	chr5:58561000-58563200	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr5:58561000-58569800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr5:58561000-58571000	Weak transcription	Left Ventricle	heart
10	chr5:58561400-58563200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr5:58561600-58563200	Enhancers	Fetal Intestine Small	intestine
12	chr5:58562000-58565400	Enhancers	Colon Smooth Muscle	Colon
13	chr5:58562200-58564000	Flanking Active TSS	A549	lung
14	chr5:58562800-58563600	Weak transcription	Stomach Mucosa	stomach
15	chr5:58562800-58568800	Weak transcription	Duodenum Mucosa	Duodenum
16	chr5:58563000-58563200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr5:58563000-58563600	Weak transcription	Hela-S3	cervix
18	chr5:58563000-58568200	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr5:58563000-58568200	Weak transcription	Rectal Mucosa Donor 29	rectum
20	chr5:58563000-58568800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr5:58563000-58569000	Weak transcription	Psoas Muscle	Psoas

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