Variant report

Variant	rs2669450
Chromosome Location	chr8:105371752-105371753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12681140	0.93[ASN][1000 genomes]
rs1812214	0.93[ASN][1000 genomes]
rs2458413	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2458414	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2514667	0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7010076	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105364800-105373400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr8:105365200-105371800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr8:105365200-105373600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr8:105366400-105371800	Weak transcription	Osteobl	bone
5	chr8:105366400-105372200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr8:105366400-105378200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:105368600-105374600	Weak transcription	Brain Cingulate Gyrus	brain
8	chr8:105368800-105372200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr8:105370000-105374800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr8:105370400-105374200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr8:105370800-105372600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr8:105371400-105371800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr8:105371600-105372000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr8:105371600-105373000	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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