Variant report

Variant	rs7010076
Chromosome Location	chr8:105342827-105342828
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12681140	0.82[ASN][1000 genomes]
rs1812214	0.82[ASN][1000 genomes]
rs2458413	0.86[MEX][hapmap]
rs2458419	0.81[JPT][hapmap]
rs2514667	0.85[AMR][1000 genomes]
rs2669450	0.87[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1016087	chr8:105228670-105934368	Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1032775	chr8:105311364-105409972	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:105337800-105343200	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr8:105340600-105343600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:105340800-105343200	Enhancers	Primary hematopoietic stem cells	blood
4	chr8:105341200-105348200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr8:105341600-105343600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr8:105342400-105343200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:105342400-105343200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr8:105342400-105343200	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr8:105342400-105343200	Active TSS	Rectal Smooth Muscle	rectum
10	chr8:105342600-105343200	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr8:105342600-105343200	Enhancers	Fetal Lung	lung
12	chr8:105342600-105343600	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:105342600-105343800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr8:105342800-105343000	Enhancers	Stomach Smooth Muscle	stomach
15	chr8:105342800-105343200	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr8:105342800-105343400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr8:105342800-105343400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr8:105342800-105344000	Enhancers	Duodenum Mucosa	Duodenum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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