Variant report

Variant	rs2669561
Chromosome Location	chr12:26194027-26194028
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs11494759	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1355707	0.81[EUR][1000 genomes]
rs2643934	0.80[AMR][1000 genomes]
rs2669560	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2729633	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2729653	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs924052	0.81[EUR][1000 genomes]
rs949849	0.81[EUR][1000 genomes]

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:26180800-26195000	Weak transcription	HSMM	muscle
2	chr12:26181000-26195200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:26182200-26195800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:26186000-26200400	Weak transcription	Right Ventricle	heart
5	chr12:26186200-26195000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr12:26187200-26195800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr12:26187200-26196200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr12:26187200-26200400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:26187800-26194800	Weak transcription	HUVEC	blood vessel
10	chr12:26188000-26194600	Weak transcription	Osteobl	bone
11	chr12:26188000-26195200	Weak transcription	Fetal Kidney	kidney
12	chr12:26188200-26194600	Weak transcription	NHDF-Ad	bronchial
13	chr12:26188200-26194800	Weak transcription	NH-A	brain
14	chr12:26189200-26194800	Weak transcription	Hela-S3	cervix
15	chr12:26191000-26195000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr12:26191000-26195400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr12:26191000-26196000	Weak transcription	Ovary	ovary
18	chr12:26191200-26195000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr12:26191200-26195000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr12:26191200-26195200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr12:26191400-26194600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr12:26191400-26195800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr12:26191400-26196000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr12:26192200-26195000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr12:26192400-26194600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr12:26192400-26195000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr12:26192400-26195000	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr12:26192400-26195200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr12:26192400-26195200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
30	chr12:26192400-26195200	Weak transcription	Colon Smooth Muscle	Colon
31	chr12:26192400-26195800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr12:26192400-26195800	Weak transcription	Psoas Muscle	Psoas
33	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr12:26192400-26195800	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr12:26192400-26196000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr12:26192400-26228600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr12:26192600-26195000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr12:26193400-26194600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr12:26193400-26194800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr12:26193400-26195200	Weak transcription	Brain Hippocampus Middle	brain
41	chr12:26193600-26194800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr12:26193600-26195000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr12:26193600-26195000	Weak transcription	Brain Anterior Caudate	brain
44	chr12:26193600-26195200	Weak transcription	Brain Cingulate Gyrus	brain
45	chr12:26193600-26195400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr12:26193600-26195800	Weak transcription	Aorta	Aorta
47	chr12:26193600-26195800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr12:26193600-26196000	Weak transcription	H1 Cell Line	embryonic stem cell
49	chr12:26193600-26196000	Weak transcription	Brain Angular Gyrus	brain
50	chr12:26193600-26196000	Weak transcription	Brain Substantia Nigra	brain

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