Variant report
| Variant | rs2670250 |
|---|---|
| Chromosome Location | chr3:21871706-21871707 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:28)
| rs_ID | r2[population] |
|---|---|
| rs1817633 | 0.89[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs2630786 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2630788 | 1.00[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2630789 | 0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2630790 | 0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2630791 | 0.97[EUR][1000 genomes] |
| rs2630794 | 0.94[EUR][1000 genomes] |
| rs2630800 | 0.94[EUR][1000 genomes] |
| rs2670246 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2670247 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2670248 | 1.00[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2670249 | 1.00[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2670251 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2670261 | 0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2670262 | 0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2670263 | 0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2670264 | 0.97[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs2670279 | 0.93[EUR][1000 genomes] |
| rs2670280 | 0.94[EUR][1000 genomes] |
| rs2670281 | 0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2670282 | 0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2673505 | 1.00[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2673523 | 0.86[EUR][1000 genomes] |
| rs2673526 | 0.84[EUR][1000 genomes] |
| rs2673528 | 0.94[EUR][1000 genomes] |
| rs2673529 | 0.97[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2673530 | 0.97[EUR][1000 genomes];0.84[ASN][1000 genomes] |
| rs2673531 | 1.00[EUR][1000 genomes];0.82[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv534005 | chr3:21387588-22003293 | Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 8 gene(s) | inside rSNPs | diseases |
| 2 | esv2751992 | chr3:21786893-22212357 | Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv948555 | chr3:21786893-22212357 | Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv834632 | chr3:21803941-21974082 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | nsv470494 | chr3:21839871-21872193 | Enhancers Weak transcription ZNF genes & repeats | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:21868200-21872200 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
| 2 | chr3:21871600-21873200 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
