Variant report

Variant	rs2671455
Chromosome Location	chr3:111574758-111574759
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL2	chr3:111574724-111575237	SK-N-SH	brain:	n/a	n/a
2	GATA3	chr3:111574593-111575368	SK-N-SH	brain:	n/a	n/a
3	GATA3	chr3:111574698-111575358	SK-N-SH	brain:	n/a	n/a

Variant related genes	Relation type
PHLDB2	TF binding region

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12488995	0.97[ASN][1000 genomes]
rs16858719	0.99[ASN][1000 genomes]
rs4396866	0.88[ASN][1000 genomes]
rs58242934	0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111563000-111577400	Weak transcription	HepG2	liver
3	chr3:111566200-111577400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:111567800-111577400	Weak transcription	Liver	Liver
5	chr3:111567800-111577400	Weak transcription	NHDF-Ad	bronchial
6	chr3:111570400-111577600	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr3:111570600-111575400	Weak transcription	Small Intestine	intestine
8	chr3:111570800-111575800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr3:111570800-111577400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr3:111571000-111577400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr3:111571200-111575000	Enhancers	Fetal Intestine Large	intestine
12	chr3:111571200-111577400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr3:111571200-111577400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr3:111571600-111575400	Weak transcription	Right Ventricle	heart
15	chr3:111571600-111577400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr3:111571600-111577400	Weak transcription	HMEC	breast
17	chr3:111571600-111577400	Weak transcription	HSMM	muscle
18	chr3:111571600-111577400	Weak transcription	NHLF	lung
19	chr3:111571800-111575000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr3:111571800-111575400	Weak transcription	Adipose Nuclei	Adipose
21	chr3:111571800-111576400	Weak transcription	NH-A	brain
22	chr3:111571800-111577200	Weak transcription	Hela-S3	cervix
23	chr3:111571800-111577400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr3:111571800-111577400	Weak transcription	A549	lung
25	chr3:111572000-111575000	Weak transcription	NHEK	skin
26	chr3:111572200-111577400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr3:111572200-111577400	Weak transcription	Osteobl	bone
28	chr3:111572400-111575400	Weak transcription	Colon Smooth Muscle	Colon
29	chr3:111572400-111575800	Weak transcription	Stomach Smooth Muscle	stomach
30	chr3:111572400-111577400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:111572400-111577400	Weak transcription	Duodenum Mucosa	Duodenum
32	chr3:111572400-111577400	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr3:111572400-111577600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr3:111572400-111577600	Weak transcription	Fetal Kidney	kidney
35	chr3:111572600-111577400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr3:111572600-111577400	Weak transcription	HUVEC	blood vessel
37	chr3:111572800-111577400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr3:111573800-111575000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
39	chr3:111573800-111575600	Weak transcription	Placenta	Placenta
40	chr3:111574000-111574800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
41	chr3:111574000-111577400	Weak transcription	HUES6 Cell Line	embryonic stem cell
42	chr3:111574200-111577400	Weak transcription	Spleen	Spleen
43	chr3:111574400-111577400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr3:111574400-111577400	Weak transcription	Fetal Heart	heart
45	chr3:111574400-111577400	Weak transcription	Fetal Intestine Small	intestine
46	chr3:111574600-111575800	Enhancers	Placenta Amnion	Placenta Amnion

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