Variant report

Variant	rs58242934
Chromosome Location	chr3:111574081-111574082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12487229	1.00[EUR][1000 genomes]
rs12488995	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1392329	1.00[EUR][1000 genomes]
rs16858719	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858743	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16858745	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16858748	1.00[EUR][1000 genomes]
rs16858764	1.00[EUR][1000 genomes]
rs2671455	0.99[ASN][1000 genomes]
rs4396866	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57738321	1.00[EUR][1000 genomes]
rs7632432	1.00[EUR][1000 genomes]
rs7646340	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111563000-111577400	Weak transcription	HepG2	liver
3	chr3:111566200-111577400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:111567800-111577400	Weak transcription	Liver	Liver
5	chr3:111567800-111577400	Weak transcription	NHDF-Ad	bronchial
6	chr3:111570200-111574400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:111570400-111577600	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr3:111570600-111575400	Weak transcription	Small Intestine	intestine
9	chr3:111570800-111575800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:111570800-111577400	Weak transcription	Fetal Muscle Trunk	muscle
11	chr3:111571000-111577400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:111571200-111575000	Enhancers	Fetal Intestine Large	intestine
13	chr3:111571200-111577400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr3:111571200-111577400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr3:111571600-111575400	Weak transcription	Right Ventricle	heart
16	chr3:111571600-111577400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr3:111571600-111577400	Weak transcription	HMEC	breast
18	chr3:111571600-111577400	Weak transcription	HSMM	muscle
19	chr3:111571600-111577400	Weak transcription	NHLF	lung
20	chr3:111571800-111575000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr3:111571800-111575400	Weak transcription	Adipose Nuclei	Adipose
22	chr3:111571800-111576400	Weak transcription	NH-A	brain
23	chr3:111571800-111577200	Weak transcription	Hela-S3	cervix
24	chr3:111571800-111577400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr3:111571800-111577400	Weak transcription	A549	lung
26	chr3:111572000-111575000	Weak transcription	NHEK	skin
27	chr3:111572200-111577400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr3:111572200-111577400	Weak transcription	Osteobl	bone
29	chr3:111572400-111575400	Weak transcription	Colon Smooth Muscle	Colon
30	chr3:111572400-111575800	Weak transcription	Stomach Smooth Muscle	stomach
31	chr3:111572400-111577400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr3:111572400-111577400	Weak transcription	Duodenum Mucosa	Duodenum
33	chr3:111572400-111577400	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr3:111572400-111577600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:111572400-111577600	Weak transcription	Fetal Kidney	kidney
36	chr3:111572600-111577400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr3:111572600-111577400	Weak transcription	HUVEC	blood vessel
38	chr3:111572800-111577400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:111573000-111574200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
40	chr3:111573200-111574400	Enhancers	Fetal Intestine Small	intestine
41	chr3:111573800-111574400	Enhancers	Fetal Heart	heart
42	chr3:111573800-111575000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr3:111573800-111575600	Weak transcription	Placenta	Placenta
44	chr3:111574000-111574200	Enhancers	Placenta Amnion	Placenta Amnion
45	chr3:111574000-111574800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
46	chr3:111574000-111577400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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