Variant report

Variant	rs16858764
Chromosome Location	chr3:111591110-111591111
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111577297..111579661-chr3:111589564..111591815,2	MCF-7	breast:
2	chr3:111589933..111591550-chr3:111593680..111595184,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144824	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs12487229	1.00[EUR][1000 genomes]
rs12488995	1.00[EUR][1000 genomes]
rs1392329	1.00[ASW][hapmap];0.96[GIH][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.94[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs16858719	1.00[EUR][1000 genomes]
rs16858743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858745	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16858748	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4396866	1.00[EUR][1000 genomes]
rs57738321	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58242934	1.00[EUR][1000 genomes]
rs7632432	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7646340	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:74 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111581400-111593800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr3:111582200-111593200	Weak transcription	Lung	lung
3	chr3:111583800-111591200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:111584600-111593200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr3:111584600-111603400	Weak transcription	Fetal Intestine Large	intestine
6	chr3:111584800-111591200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr3:111585200-111591200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr3:111585200-111591200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:111585200-111591200	Weak transcription	Fetal Muscle Leg	muscle
10	chr3:111585200-111591200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr3:111585200-111622000	Weak transcription	HSMMtube	muscle
12	chr3:111585400-111592800	Weak transcription	HSMM	muscle
13	chr3:111585400-111593400	Weak transcription	Psoas Muscle	Psoas
14	chr3:111585400-111603400	Weak transcription	Spleen	Spleen
15	chr3:111585400-111609000	Weak transcription	Esophagus	oesophagus
16	chr3:111585600-111592400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:111586400-111593000	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:111587000-111591200	Weak transcription	Right Atrium	heart
19	chr3:111587000-111591400	Enhancers	Fetal Heart	heart
20	chr3:111587000-111591600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr3:111587200-111593000	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:111587200-111593200	Weak transcription	Gastric	stomach
23	chr3:111587200-111597200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr3:111587200-111603000	Weak transcription	Placenta	Placenta
25	chr3:111587800-111591200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr3:111587800-111599200	Weak transcription	Liver	Liver
27	chr3:111588000-111593800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr3:111588800-111592400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr3:111589000-111593200	Enhancers	A549	lung
30	chr3:111589200-111591200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr3:111589200-111591400	Strong transcription	HMEC	breast
32	chr3:111589200-111598400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:111589200-111603400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr3:111589400-111591800	Weak transcription	Hela-S3	cervix
35	chr3:111589400-111591800	Strong transcription	HUVEC	blood vessel
36	chr3:111589800-111592000	Strong transcription	NH-A	brain
37	chr3:111589800-111592400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr3:111589800-111592400	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:111589800-111592600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr3:111589800-111592600	Weak transcription	NHDF-Ad	bronchial
41	chr3:111589800-111593200	Weak transcription	NHLF	lung
42	chr3:111589800-111603400	Weak transcription	Pancreas	Pancrea
43	chr3:111590000-111591200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr3:111590000-111591200	Weak transcription	HUES48 Cell Line	embryonic stem cell
45	chr3:111590200-111591200	Weak transcription	Placenta Amnion	Placenta Amnion
46	chr3:111590200-111591200	Strong transcription	NHEK	skin
47	chr3:111590200-111591400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr3:111590200-111591600	Strong transcription	Osteobl	bone
49	chr3:111590600-111591600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:111590600-111591600	Enhancers	Fetal Lung	lung

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