Variant report

Variant	rs2671717
Chromosome Location	chr10:50149674-50149675
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10776661	0.81[YRI][hapmap];0.95[AFR][1000 genomes]
rs2663017	0.83[AFR][1000 genomes]
rs2663026	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs2671714	0.80[AFR][1000 genomes]
rs2671716	0.83[AFR][1000 genomes]
rs2671718	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs2940734	1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2941196	1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4240517	1.00[YRI][hapmap];0.95[AFR][1000 genomes]
rs7393414	0.92[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50121000-50155800	Weak transcription	Primary T cells from cord blood	blood
2	chr10:50125400-50154400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:50127800-50150400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr10:50127800-50150600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr10:50134600-50160400	Weak transcription	Right Atrium	heart
6	chr10:50135400-50149800	Weak transcription	Spleen	Spleen
7	chr10:50143400-50153200	Weak transcription	Fetal Muscle Leg	muscle
8	chr10:50143600-50164400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr10:50144600-50196200	Strong transcription	Primary B cells from cord blood	blood
10	chr10:50145000-50193200	Strong transcription	Primary B cells from peripheral blood	blood
11	chr10:50145400-50193200	Strong transcription	Monocytes-CD14+_RO01746	blood
12	chr10:50145800-50193400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:50147000-50152800	Strong transcription	Primary monocytes fromperipheralblood	blood
14	chr10:50148000-50193600	Strong transcription	Primary neutrophils fromperipheralblood	blood
15	chr10:50148200-50152400	Strong transcription	GM12878-XiMat	blood
16	chr10:50148800-50149800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:50148800-50149800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:50149000-50149800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr10:50149000-50149800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr10:50149600-50161200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood

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