Variant report

Variant	rs2671718
Chromosome Location	chr10:50153509-50153510
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:50153379-50154012	HUVEC	blood vessel:	n/a	n/a
2	CTCF	chr10:50153497-50153729	HUVEC	blood vessel:	n/a	n/a
3	CTCF	chr10:50153500-50153650	HUVEC	blood vessel:	n/a	n/a
4	FOS	chr10:50153499-50153852	HUVEC	blood vessel:	n/a	n/a
5	MAFK	chr10:50153458-50153598	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
WDFY4	TF binding region

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10776661	0.81[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1107405	1.00[AMR][1000 genomes]
rs1877801	1.00[AMR][1000 genomes]
rs1913515	1.00[AMR][1000 genomes]
rs1913527	1.00[AMR][1000 genomes]
rs2137908	1.00[AMR][1000 genomes]
rs2175914	1.00[AMR][1000 genomes]
rs2247064	1.00[AMR][1000 genomes]
rs2249294	0.89[ASW][hapmap];1.00[AMR][1000 genomes]
rs2249644	1.00[AMR][1000 genomes]
rs2253888	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs2377693	1.00[AMR][1000 genomes]
rs2663017	0.81[ASW][hapmap]
rs2663022	1.00[AMR][1000 genomes]
rs2663026	0.92[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2671717	0.90[YRI][hapmap];0.81[AFR][1000 genomes]
rs2671720	0.81[ASW][hapmap]
rs2940709	1.00[AMR][1000 genomes]
rs2940734	0.91[YRI][hapmap];0.82[AFR][1000 genomes]
rs2941196	0.92[YRI][hapmap]
rs4240517	1.00[ASW][hapmap];0.92[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7393414	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7908106	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50121000-50155800	Weak transcription	Primary T cells from cord blood	blood
2	chr10:50125400-50154400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:50134600-50160400	Weak transcription	Right Atrium	heart
4	chr10:50143600-50164400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:50144600-50196200	Strong transcription	Primary B cells from cord blood	blood
6	chr10:50145000-50193200	Strong transcription	Primary B cells from peripheral blood	blood
7	chr10:50145400-50193200	Strong transcription	Monocytes-CD14+_RO01746	blood
8	chr10:50145800-50193400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
9	chr10:50148000-50193600	Strong transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:50149600-50161200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:50150400-50159000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr10:50151200-50153800	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr10:50152200-50154600	Weak transcription	Spleen	Spleen
14	chr10:50152600-50153600	Enhancers	HUVEC	blood vessel
15	chr10:50152800-50153600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr10:50152800-50154600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr10:50153000-50156200	Enhancers	Fetal Muscle Trunk	muscle
18	chr10:50153200-50155000	Enhancers	Fetal Intestine Large	intestine
19	chr10:50153200-50155000	Enhancers	Fetal Intestine Small	intestine
20	chr10:50153200-50156400	Enhancers	Fetal Muscle Leg	muscle
21	chr10:50153400-50153800	Enhancers	Aorta	Aorta
22	chr10:50153400-50154400	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr10:50153400-50187800	Strong transcription	GM12878-XiMat	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links