Variant report

Variant	rs2940709
Chromosome Location	chr10:50141938-50141939
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:50138053..50139572-chr10:50141189..50143147,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10776661	1.00[AMR][1000 genomes]
rs1107405	1.00[AMR][1000 genomes]
rs1877801	1.00[AMR][1000 genomes]
rs1913515	1.00[AMR][1000 genomes]
rs1913527	1.00[AMR][1000 genomes]
rs2137908	1.00[AMR][1000 genomes]
rs2175914	1.00[AMR][1000 genomes]
rs2247064	1.00[AMR][1000 genomes]
rs2249294	1.00[AMR][1000 genomes]
rs2249644	1.00[AMR][1000 genomes]
rs2253888	1.00[AMR][1000 genomes]
rs2377693	1.00[AMR][1000 genomes]
rs2663022	1.00[AMR][1000 genomes]
rs2663026	1.00[AMR][1000 genomes]
rs2671708	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs2671718	1.00[AMR][1000 genomes]
rs4240517	1.00[AMR][1000 genomes]
rs7393414	1.00[AMR][1000 genomes]
rs7908106	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831865	chr10:49994254-50164239	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50121000-50155800	Weak transcription	Primary T cells from cord blood	blood
2	chr10:50125400-50154400	Weak transcription	Primary hematopoietic stem cells	blood
3	chr10:50127800-50147000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr10:50127800-50150400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr10:50127800-50150600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr10:50130200-50143000	Strong transcription	Primary B cells from peripheral blood	blood
7	chr10:50130800-50143600	Strong transcription	Primary B cells from cord blood	blood
8	chr10:50134600-50160400	Weak transcription	Right Atrium	heart
9	chr10:50135400-50149800	Weak transcription	Spleen	Spleen
10	chr10:50135600-50145800	Weak transcription	GM12878-XiMat	blood
11	chr10:50138600-50145400	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr10:50139000-50142000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr10:50139600-50142800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr10:50139600-50142800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr10:50139800-50143600	Weak transcription	Pancreas	Pancrea
16	chr10:50140000-50142400	Weak transcription	Fetal Lung	lung
17	chr10:50140200-50143200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr10:50141000-50142000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr10:50141400-50142600	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr10:50141600-50142800	Enhancers	Fetal Stomach	stomach
21	chr10:50141800-50142600	Enhancers	Dnd41	blood

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