Variant report

Variant	rs2249644
Chromosome Location	chr10:50194988-50194989
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10776661	1.00[AMR][1000 genomes]
rs1107405	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1877801	1.00[AMR][1000 genomes]
rs1913515	1.00[AMR][1000 genomes]
rs1913527	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2137908	1.00[AMR][1000 genomes]
rs2175914	1.00[AMR][1000 genomes]
rs2247064	1.00[AMR][1000 genomes]
rs2249294	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2253888	1.00[AMR][1000 genomes]
rs2377693	1.00[AMR][1000 genomes]
rs2663022	1.00[AMR][1000 genomes]
rs2663026	1.00[AMR][1000 genomes]
rs2671718	1.00[AMR][1000 genomes]
rs2940709	1.00[AMR][1000 genomes]
rs4240517	1.00[AMR][1000 genomes]
rs7393414	1.00[AMR][1000 genomes]
rs7908106	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895371	chr10:49492075-50232180	Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	35 gene(s)	inside rSNPs	diseases
2	nsv831866	chr10:50165180-50335276	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:50144600-50196200	Strong transcription	Primary B cells from cord blood	blood
2	chr10:50189800-50195200	Weak transcription	Fetal Lung	lung
3	chr10:50189800-50201200	Weak transcription	Right Atrium	heart
4	chr10:50190400-50204600	Weak transcription	Fetal Muscle Leg	muscle
5	chr10:50192400-50197600	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:50193200-50195000	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr10:50193400-50195000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr10:50193600-50195400	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr10:50193600-50196200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr10:50193600-50196600	Weak transcription	Spleen	Spleen
11	chr10:50193800-50195600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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