Variant report

Variant	rs26732
Chromosome Location	chr5:106939365-106939366
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs154191	0.86[CEU][hapmap];0.85[EUR][1000 genomes]
rs164691	1.00[YRI][hapmap]
rs164694	1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs164695	0.81[EUR][1000 genomes]
rs164696	0.81[EUR][1000 genomes]
rs26724	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs26725	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs26726	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs26728	0.84[CEU][hapmap];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1034276	chr5:106461538-106944163	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv537851	chr5:106461538-106944163	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
3	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106926000-106941000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr5:106929400-106945400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr5:106930600-106939800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr5:106930600-106939800	Weak transcription	Left Ventricle	heart
5	chr5:106930600-106944200	Weak transcription	Esophagus	oesophagus
6	chr5:106930800-106940000	Weak transcription	HMEC	breast
7	chr5:106930800-106940400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr5:106930800-106940600	Weak transcription	HSMM	muscle
9	chr5:106933400-106952600	Weak transcription	Aorta	Aorta
10	chr5:106933600-106940600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr5:106934400-106941000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr5:106935000-106941400	Weak transcription	HUVEC	blood vessel
13	chr5:106935600-106940600	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr5:106935800-106942600	Enhancers	Fetal Heart	heart
15	chr5:106935800-106942800	Weak transcription	Fetal Kidney	kidney
16	chr5:106936000-106941400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr5:106936200-106939800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:106936200-106941400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr5:106936800-106939600	Enhancers	A549	lung
20	chr5:106937200-106940400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr5:106937200-106942800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr5:106937800-106939800	Enhancers	Fetal Brain Female	brain
23	chr5:106937800-106942200	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr5:106937800-106942400	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr5:106937800-106944600	Enhancers	Fetal Brain Male	brain
26	chr5:106938000-106939800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr5:106938200-106941000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr5:106938200-106942600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr5:106938600-106939400	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr5:106938600-106939400	Enhancers	Right Ventricle	heart
31	chr5:106938600-106939600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr5:106938600-106940800	Weak transcription	Fetal Stomach	stomach
33	chr5:106938800-106940200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:106938800-106940400	Weak transcription	GM12878-XiMat	blood
35	chr5:106938800-106944600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr5:106939000-106939600	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr5:106939200-106939400	Enhancers	iPS-15b Cell Line	embryonic stem cell
38	chr5:106939200-106940400	Enhancers	Dnd41	blood
39	chr5:106939200-106941000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr5:106939200-106942200	Enhancers	NHDF-Ad	bronchial

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links