Variant report

Variant	rs26726
Chromosome Location	chr5:106944541-106944542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106943782..106947314-chr5:107006356..107009674,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184349	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs149382	0.80[CEU][hapmap]
rs164693	0.82[CEU][hapmap];0.85[EUR][1000 genomes]
rs164970	0.81[EUR][1000 genomes]
rs26724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs26725	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs26729	0.82[CEU][hapmap]
rs26732	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs26735	0.82[CEU][hapmap]
rs352602	0.84[CEU][hapmap];0.84[EUR][1000 genomes]
rs352615	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs35533	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs35534	0.85[EUR][1000 genomes]
rs42449	0.96[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106929400-106945400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:106933400-106952600	Weak transcription	Aorta	Aorta
3	chr5:106937800-106944600	Enhancers	Fetal Brain Male	brain
4	chr5:106938800-106944600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr5:106940600-106945600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr5:106941400-106950800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr5:106941600-106947400	Weak transcription	NHLF	lung
8	chr5:106941600-106952000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr5:106941800-106946200	Weak transcription	HMEC	breast
10	chr5:106942200-106946600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:106942200-106950200	Weak transcription	NHDF-Ad	bronchial
12	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:106942800-106944600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr5:106942800-106944600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:106943000-106944600	Enhancers	Fetal Heart	heart
16	chr5:106943200-106944800	Enhancers	A549	lung
17	chr5:106943400-106944600	Enhancers	H1 Cell Line	embryonic stem cell
18	chr5:106943400-106944600	Enhancers	Right Ventricle	heart
19	chr5:106943600-106944600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr5:106944000-106944600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr5:106944000-106947000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr5:106944200-106944600	Enhancers	Left Ventricle	heart
23	chr5:106944200-106945400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr5:106944200-106945400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr5:106944200-106946400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr5:106944200-106949600	Weak transcription	Fetal Kidney	kidney
27	chr5:106944400-106944600	Weak transcription	Esophagus	oesophagus
28	chr5:106944400-106945200	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr5:106944400-106946400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr5:106944400-106946800	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr5:106944400-106946800	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr5:106944400-106946800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr5:106944400-106948200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr5:106944400-106948400	Weak transcription	Pancreatic Islets	Pancreatic Islet
35	chr5:106944400-106950200	Weak transcription	Fetal Lung	lung

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