Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106955302..106958029-chr5:107006290..107008024,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184349	Chromatin interaction

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1363870	0.85[CHB][hapmap]
rs149382	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs154191	0.85[CHB][hapmap];0.85[ASN][1000 genomes]
rs164690	0.84[AMR][1000 genomes]
rs164691	0.85[CHB][hapmap]
rs164693	0.85[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs164694	0.85[CHB][hapmap]
rs164837	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs164970	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs26724	0.85[EUR][1000 genomes]
rs26726	0.85[EUR][1000 genomes]
rs26728	0.85[CHB][hapmap];0.84[ASN][1000 genomes]
rs26729	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs26730	0.85[CHB][hapmap]
rs26735	0.88[JPT][hapmap]
rs27550	0.85[CHB][hapmap]
rs352602	0.85[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35419	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs35533	0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs42449	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:106944600-106969200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:106947200-106957400	Weak transcription	GM12878-XiMat	blood
4	chr5:106953200-106956800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr5:106953200-106959600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:106953400-106957000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr5:106953600-106962200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr5:106954200-106956800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr5:106954200-106967600	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:106954400-106956800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:106954400-106968800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:106954800-106959400	Weak transcription	Fetal Heart	heart
13	chr5:106955400-106969000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr5:106956000-106968200	Weak transcription	A549	lung
15	chr5:106956200-106956600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr5:106956200-106959800	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:106956400-106956600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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