Variant report

Variant	rs26730
Chromosome Location	chr5:106984650-106984651
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1363870	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs149382	1.00[CHB][hapmap];0.85[ASN][1000 genomes]
rs154191	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes]
rs164691	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes]
rs164693	1.00[CHB][hapmap]
rs164694	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs164695	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs164696	0.93[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs164837	1.00[CHB][hapmap]
rs26728	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs26729	1.00[CHB][hapmap]
rs26735	0.86[CHB][hapmap]
rs27550	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs27551	0.98[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs352602	1.00[CHB][hapmap]
rs35419	1.00[CHB][hapmap];0.84[ASN][1000 genomes]
rs35533	1.00[CHB][hapmap]
rs35534	0.85[CHB][hapmap]
rs42449	1.00[CHB][hapmap]
rs60027737	0.81[ASN][1000 genomes]
rs6887589	0.85[CHB][hapmap]
rs73200647	0.81[ASN][1000 genomes]
rs73200655	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv1797335	chr5:106981612-107004761	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106969600-106988600	Weak transcription	Fetal Stomach	stomach
2	chr5:106970200-106985600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:106972200-106986000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:106976600-106987200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:106976600-106991600	Weak transcription	Left Ventricle	heart
6	chr5:106979200-106985800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:106979400-106985600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:106979400-106988600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:106981800-106985800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr5:106982400-106985800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:106982400-106989000	Weak transcription	Stomach Mucosa	stomach
12	chr5:106982400-106990200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr5:106983200-106984800	Enhancers	Fetal Heart	heart
14	chr5:106983200-106985200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr5:106983600-106985400	Weak transcription	HMEC	breast
16	chr5:106983600-106990800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:106983800-106989400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr5:106984400-106991600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr5:106984600-106985000	Enhancers	A549	lung
20	chr5:106984600-106988000	Weak transcription	Fetal Lung	lung

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