Variant report

Variant	rs164837
Chromosome Location	chr5:106976125-106976126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs1363870	1.00[CHB][hapmap]
rs149382	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs154191	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs164690	0.81[ASN][1000 genomes]
rs164691	1.00[CHB][hapmap];0.80[ASN][1000 genomes]
rs164693	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs164694	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs164695	0.87[ASN][1000 genomes]
rs164696	0.87[ASN][1000 genomes]
rs164970	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs26724	0.80[CEU][hapmap]
rs26728	1.00[CHB][hapmap]
rs26729	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs26730	1.00[CHB][hapmap]
rs26735	0.86[CHB][hapmap];0.88[JPT][hapmap]
rs27550	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs27551	0.88[ASN][1000 genomes]
rs352602	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35419	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[YRI][hapmap];0.99[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35533	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35534	0.85[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs42449	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6887589	0.85[CHB][hapmap]
rs7725449	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:106966800-106979600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:106968400-106977600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:106969400-106978800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr5:106969600-106988600	Weak transcription	Fetal Stomach	stomach
6	chr5:106970200-106985600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
7	chr5:106971600-106978800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:106972200-106976400	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr5:106972200-106986000	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:106972600-106981800	Weak transcription	HMEC	breast
11	chr5:106972800-106983400	Weak transcription	Fetal Lung	lung
12	chr5:106973200-106978800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr5:106973200-106981600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
14	chr5:106973400-106982000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:106974400-106976600	Enhancers	Fetal Heart	heart
16	chr5:106975400-106976400	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr5:106975800-106976400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr5:106975800-106976600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr5:106976000-106976400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr5:106976000-106976400	Weak transcription	A549	lung
21	chr5:106976000-106976600	Genic enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr5:106976000-106976600	Enhancers	Cortex derived primary cultured neurospheres	brain
23	chr5:106976000-106976600	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet

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