Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr5:107011536-107011905	H1-hESC	embryonic stem cell:	n/a	n/a
2	RAD21	chr5:107011420-107011912	H1-hESC	embryonic stem cell:	n/a	n/a
3	CTCF	chr5:107011500-107011650	AG04450	lung:	n/a	n/a

Variant related genes	Relation type
EFNA5	TF binding region

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1363870	0.85[CHB][hapmap]
rs1490836	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs149382	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs154191	0.85[CHB][hapmap]
rs164691	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs164693	0.85[CHB][hapmap]
rs164694	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs164837	0.85[CHB][hapmap]
rs17351329	0.94[ASN][1000 genomes]
rs26728	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs26729	0.85[CHB][hapmap]
rs26730	0.85[CHB][hapmap]
rs27550	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs352602	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs35419	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs35533	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs42449	0.85[CHB][hapmap]
rs59961335	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62357891	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357932	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62357937	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6596744	0.90[ASN][1000 genomes]
rs67843712	0.83[EUR][1000 genomes]
rs73200677	0.83[ASN][1000 genomes]
rs7704700	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107009400-107023200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:107009600-107015800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107009600-107018200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:107009800-107011600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr5:107009800-107017800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:107010000-107011600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr5:107010000-107011600	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr5:107010000-107018200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:107010200-107011600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr5:107010400-107016400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:107010800-107011800	Weak transcription	A549	lung
12	chr5:107010800-107012200	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:107011200-107012200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr5:107011400-107012200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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