Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs1352726	0.95[ASN][1000 genomes]
rs1363870	0.86[CHB][hapmap]
rs1388135	0.95[ASN][1000 genomes]
rs1388136	0.95[ASN][1000 genomes]
rs149382	0.86[CHB][hapmap]
rs154191	0.86[CHB][hapmap]
rs164691	0.86[CHB][hapmap]
rs164693	0.86[CHB][hapmap]
rs164694	0.86[CHB][hapmap]
rs164837	0.86[CHB][hapmap]
rs26728	0.86[CHB][hapmap]
rs26729	0.86[CHB][hapmap]
rs26730	0.86[CHB][hapmap]
rs27550	0.86[CHB][hapmap]
rs352602	0.86[CHB][hapmap]
rs35419	0.86[CHB][hapmap]
rs35533	0.86[CHB][hapmap]
rs42449	0.86[CHB][hapmap]
rs59961335	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357891	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62357932	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357937	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357940	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67843712	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6887589	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs723798	0.95[ASN][1000 genomes]
rs73200677	0.89[ASN][1000 genomes]
rs73200681	0.95[ASN][1000 genomes]
rs73200683	0.95[ASN][1000 genomes]
rs73202711	0.84[ASN][1000 genomes]
rs7444469	0.95[ASN][1000 genomes]
rs7704700	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107032400-107049000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:107041600-107045000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107041600-107049000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:107042800-107043200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
5	chr5:107043000-107043400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell

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