Variant report

Variant	rs7444469
Chromosome Location	chr5:107038351-107038352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1352726	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1363870	0.86[CHB][hapmap]
rs1388135	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1388136	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1490836	0.95[ASN][1000 genomes]
rs149382	0.86[CHB][hapmap]
rs154191	0.86[CHB][hapmap]
rs164691	0.86[CHB][hapmap]
rs164693	0.86[CHB][hapmap]
rs164694	0.86[CHB][hapmap]
rs164837	0.86[CHB][hapmap]
rs17351329	0.82[ASN][1000 genomes]
rs26728	0.86[CHB][hapmap]
rs26729	0.86[CHB][hapmap]
rs26730	0.86[CHB][hapmap]
rs27550	0.86[CHB][hapmap]
rs352602	0.86[CHB][hapmap]
rs35419	0.86[CHB][hapmap]
rs35533	0.86[CHB][hapmap]
rs42449	0.86[CHB][hapmap]
rs4588579	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4957712	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4957713	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4957714	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59961335	0.95[ASN][1000 genomes]
rs62357932	0.95[ASN][1000 genomes]
rs62357937	0.95[ASN][1000 genomes]
rs62357940	0.86[ASN][1000 genomes]
rs67843712	0.84[ASN][1000 genomes]
rs6887589	0.82[CHD][hapmap]
rs723798	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73200677	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73200681	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73200683	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73202711	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107032400-107049000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:107032800-107040600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr5:107033000-107040600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr5:107036800-107040400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr5:107036800-107040400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr5:107036800-107040600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr5:107037200-107040400	Weak transcription	NHDF-Ad	bronchial
8	chr5:107038000-107040200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:107038000-107041400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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