Variant report

Variant	rs4588579
Chromosome Location	chr5:107054562-107054563
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1352726	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1388135	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1388136	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4957712	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957713	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957714	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4957715	0.94[ASN][1000 genomes]
rs62357940	0.83[ASN][1000 genomes]
rs67843712	0.81[ASN][1000 genomes]
rs723798	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73200677	0.87[EUR][1000 genomes]
rs73200681	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73200683	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73202711	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7444469	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107053000-107071800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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