Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1352726	0.84[ASN][1000 genomes]
rs1388135	0.84[ASN][1000 genomes]
rs1388136	0.84[ASN][1000 genomes]
rs1490836	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4588579	0.81[ASN][1000 genomes]
rs4957712	0.81[ASN][1000 genomes]
rs4957713	0.81[ASN][1000 genomes]
rs4957714	0.81[ASN][1000 genomes]
rs4957715	0.83[ASN][1000 genomes]
rs59961335	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62357891	0.83[EUR][1000 genomes]
rs62357932	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62357937	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62357940	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6887589	0.83[EUR][1000 genomes]
rs723798	0.84[ASN][1000 genomes]
rs73200681	0.84[ASN][1000 genomes]
rs73200683	0.84[ASN][1000 genomes]
rs73202711	0.95[ASN][1000 genomes]
rs7444469	0.84[ASN][1000 genomes]
rs7704700	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3362504	chr5:107044478-107047026	Weak transcription ZNF genes & repeats	lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv3441686	chr5:107044728-107046951	Weak transcription ZNF genes & repeats	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107032400-107049000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr5:107041600-107049000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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