Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:107012427..107015364-chr5:107015467..107017082,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1363870	0.85[CHB][hapmap]
rs1490836	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs149382	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs154191	0.85[CHB][hapmap]
rs164691	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs164693	0.85[CHB][hapmap]
rs164694	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs164837	0.85[CHB][hapmap]
rs17351329	0.94[ASN][1000 genomes]
rs26728	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs26729	0.85[CHB][hapmap]
rs26730	0.85[CHB][hapmap]
rs27550	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs352602	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs35419	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs35533	0.85[CHB][hapmap];0.86[CHD][hapmap]
rs42449	0.85[CHB][hapmap]
rs59961335	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62357891	0.98[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357932	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62357937	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62357940	0.82[AMR][1000 genomes]
rs6596744	0.90[ASN][1000 genomes]
rs67843712	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6887589	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.96[GIH][hapmap];1.00[JPT][hapmap];0.81[LWK][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73200677	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107009400-107023200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:107009600-107015800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107009600-107018200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:107009800-107017800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:107010000-107018200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:107010400-107016400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

Quick Search: