Variant report

Variant	rs6596744
Chromosome Location	chr5:107011958-107011959
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1490834	0.82[EUR][1000 genomes]
rs17351329	0.85[ASN][1000 genomes]
rs62357891	0.90[ASN][1000 genomes]
rs6887589	0.81[ASW][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs7704700	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107009400-107023200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr5:107009600-107015800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:107009600-107018200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr5:107009800-107017800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:107010000-107018200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr5:107010400-107016400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:107010800-107012200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr5:107011200-107012200	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr5:107011400-107012200	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr5:107011600-107012000	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:107011600-107012200	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr5:107011600-107012200	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr5:107011600-107012200	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr5:107011800-107012000	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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