Variant report

Variant	rs42449
Chromosome Location	chr5:106951508-106951509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:106947661..106949350-chr5:106949633..106952196,2	MCF-7	breast:
2	chr5:106951124..106953877-chr5:106954303..106955918,2	MCF-7	breast:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1363870	1.00[CHB][hapmap]
rs149382	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs154191	1.00[CHB][hapmap];0.81[ASN][1000 genomes]
rs164691	1.00[CHB][hapmap]
rs164693	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs164694	1.00[CHB][hapmap]
rs164837	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs164970	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs26724	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs26726	0.96[CEU][hapmap];0.95[EUR][1000 genomes]
rs26728	1.00[CHB][hapmap];0.86[ASN][1000 genomes]
rs26729	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs26730	1.00[CHB][hapmap]
rs26735	0.85[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap]
rs27550	1.00[CHB][hapmap]
rs352602	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35419	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs35533	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35534	0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6887589	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106933400-106952600	Weak transcription	Aorta	Aorta
2	chr5:106941600-106952000	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr5:106944600-106952200	Weak transcription	Fetal Brain Male	brain
5	chr5:106944600-106969200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:106945600-106953200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr5:106947200-106957400	Weak transcription	GM12878-XiMat	blood
8	chr5:106947400-106952800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr5:106947800-106952000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr5:106950600-106954400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr5:106950800-106951600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:106950800-106951600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr5:106950800-106951600	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr5:106950800-106951600	Enhancers	Fetal Heart	heart
15	chr5:106950800-106952800	Enhancers	Brain Germinal Matrix	brain
16	chr5:106950800-106954200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr5:106950800-106954400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr5:106951000-106951600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr5:106951000-106951600	Flanking Active TSS	A549	lung
20	chr5:106951000-106952400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr5:106951000-106956200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:106951200-106952000	Enhancers	iPS-20b Cell Line	embryonic stem cell
23	chr5:106951200-106952000	Enhancers	Placenta Amnion	Placenta Amnion
24	chr5:106951200-106952200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr5:106951200-106954000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr5:106951400-106952000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr5:106951400-106952800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr5:106951400-106953000	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr5:106951400-106953000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
30	chr5:106951400-106953600	Weak transcription	Hela-S3	cervix
31	chr5:106951400-106953800	Weak transcription	NHDF-Ad	bronchial
32	chr5:106951400-106954600	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr5:106951400-106955600	Weak transcription	Fetal Lung	lung

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