Variant report

Variant	rs164970
Chromosome Location	chr5:106965690-106965691
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs149382	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs154191	0.82[ASN][1000 genomes]
rs164690	0.82[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs164691	0.82[ASN][1000 genomes]
rs164693	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs164694	0.89[ASN][1000 genomes]
rs164695	0.89[ASN][1000 genomes]
rs164696	0.89[ASN][1000 genomes]
rs164837	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs26724	0.81[EUR][1000 genomes]
rs26726	0.81[EUR][1000 genomes]
rs26729	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs27550	0.87[ASN][1000 genomes]
rs27551	0.87[ASN][1000 genomes]
rs352602	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35419	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35533	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35534	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs42449	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34018	chr5:106720912-107110506	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106942400-106981600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:106944600-106969200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:106954200-106967600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr5:106954400-106968800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr5:106955400-106969000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr5:106956000-106968200	Weak transcription	A549	lung
7	chr5:106961400-106966400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr5:106962400-106969200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:106962600-106969000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr5:106963200-106969200	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr5:106963800-106966800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr5:106964600-106966000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr5:106964600-106967800	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr5:106964600-106972400	Weak transcription	Fetal Heart	heart
15	chr5:106965200-106965800	Enhancers	Esophagus	oesophagus
16	chr5:106965200-106966800	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr5:106965600-106969000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr5:106965600-106969400	Weak transcription	H9 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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